| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Vapar_0528 |
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| Symbol | |
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| ID | 7972938 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Variovorax paradoxus S110 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_012791 |
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| Strand | + |
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| Start bp | 582296 |
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| End bp | 583375 |
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| Gene Length | 1080 bp |
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| Protein Length | 359 aa |
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| Translation table | 11 |
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| GC content | 73% |
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| IMG OID | 644791131 |
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| Product | type VI secretion protein, VC_A0111 family |
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| Protein accession | YP_002942457 |
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| Protein GI | 239813547 |
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| COG category | [S] Function unknown |
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| COG ID | [COG3520] Uncharacterized protein conserved in bacteria |
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| TIGRFAM ID | [TIGR03347] type VI secretion protein, VC_A0111 family |
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Plasmid Coverage information |
| Num covering plasmid clones | 14 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | GTGCGGGACC CGGCAGATTC TGTAGCCGGG AGAGTCGACA CCGCGCTGCG CGCATGGTCG
GCCGAGCCGT GGTCCTTCGA CTATTTTGCG GTGCTGCGCC GGCTGGAGTC GGTGGCCGCG
ACCACGCCGC GCTGGGGCCG TGCCCTGCTG CCGAGCGCGG AGCCGGTGCG CGTGGGACAG
GAGCCGTCGC TGTCGTTCGC GCCGGCCAGC TTCAGCCGCT TCGAGCCGGC CAGCGCCCAC
TCGCCGCCGC GCCTGCGCCA GCACTTCTTC AGCTATGTCG GGCCCAACGG TCCGCTGCCG
GTGCACCTGA GCGACTTCAT CCGCGAGCGC AGCCTGAACC ATGGCGACCC GACCTGGCTG
GCCTTTCTCG ACAGCTTTCT GCACCGCTTC TCGCTGCACT TCTACCGCGC CTGGGCGCAG
GCGCGGCCCG CGGTGGCGCT CGACCGGCCG GGCGAGGACC GCTTCCGCCT GCAGGTTGGC
GCGTTCGTGG GCATCGGCAC GCCGGGCCGC ATCGAGCGCG ACGAGGTGCA CGACGATGCG
CGCCTGCATT TCTCGGGCTG GCTCGCGCGC CGCGTGCACA ACGCCGAGAG CGTGGAAGCG
GTGCTGTGCA GCTACTTCGG CGTGCCCGTG AAGCTGGAGC GCTGGGTCGG CCACTGGATG
AGCCTGCCCG CGGGCGAGCT CACGCGGCTG GGGCAGGGCG AGAGTTCGCG TTCGATGGGC
ATGGGCGCGA TGCTCGGCAC GCGCGCGTGG GACCGGCAGC ACCGCGTGCG CCTGCACATC
GGCCCGCTCA CGCTCGCGCA GTACCGCATG TTCCTGCCGA CCGGCAACGC GCAGCCGGTG
CTGCAGCGCT GGATGCAGCA GCTGCTCGGC GACGAACTCG AATGGGACGC CGAGCTGGTG
CTCGAGACGA CGCAGGTGCC CGCCACGCGC CTTGGCCAGG CCAAGGGCAA CGCGCCGCGC
CTGGGCTGGG TCTCGTGGCT CGGCCAGCGC ACGCGTGCCA AGGATGCGGC GGACGTGCGC
ATCGGCAACC GCCCGATGAC CGCCCGCAGC GCCCAGGCCA CCGTGGGAGC CGCCGCATGA
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| Protein sequence | MRDPADSVAG RVDTALRAWS AEPWSFDYFA VLRRLESVAA TTPRWGRALL PSAEPVRVGQ
EPSLSFAPAS FSRFEPASAH SPPRLRQHFF SYVGPNGPLP VHLSDFIRER SLNHGDPTWL
AFLDSFLHRF SLHFYRAWAQ ARPAVALDRP GEDRFRLQVG AFVGIGTPGR IERDEVHDDA
RLHFSGWLAR RVHNAESVEA VLCSYFGVPV KLERWVGHWM SLPAGELTRL GQGESSRSMG
MGAMLGTRAW DRQHRVRLHI GPLTLAQYRM FLPTGNAQPV LQRWMQQLLG DELEWDAELV
LETTQVPATR LGQAKGNAPR LGWVSWLGQR TRAKDAADVR IGNRPMTARS AQATVGAAA
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