Gene Vapar_0526 details

Gene Information

• Locus tag: Vapar_0526
• ID: 7972936
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Variovorax paradoxus S110
• Kingdom: Bacteria
• Replicon accession: NC_012791
• Strand: +
• Start bp: 579905
• End bp: 580420
• Gene Length: 516 bp
• Protein Length: 171 aa
• Translation table: 11
• GC content: 63%
• IMG OID: 644791129
• Product: type VI secretion system lysozyme-related protein
• Protein accession: YP_002942455
• Protein GI: 239813545
• COG category: [S] Function unknown
• COG ID: [COG3518] Uncharacterized protein conserved in bacteria
• TIGRFAM ID: [TIGR03357] type VI secretion system lysozyme-related protein

Plasmid Coverage information

• Num covering plasmid clones: 16
• Plasmid unclonability p-value: 1
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

GTGGCCGAGC TCACCGCCCA GGAGCGCCTG CAGCCGTCGC TGCTCGACCG CCTGGTCGAC 
GACGCGCCCA CCGAAAAGCG CGAGAGCGAC GACAAGCGCA CGCTCACCAA GCAGGCGCTG 
CGCTCGGCCG TGCTGCGCGA CCTGAGCTGG CTCTTCAACG CCACCGGCTT CGGCCTTGCG 
ATGGACGACA AGCAATACCC GAACGCCGCG CGCTCGGTCA TCAACTACGG ATTGCCTATG 
CTGTCTGGCC AGTTCACCTC GTCGGTGCAG CGTGTCAGCA TGGAACAGGC TTTGAAGAAC 
GCAATCCTGC AGTTCGAGCC GCGCATTTTG TCCCGCACTC TCGAAGTTGA ACTCGTCATG 
GAAGGCTCGG CACTCGACTC GCACAACAGC ATCGGCCTGC AGATCCGCGG CATGCTGTGG 
GCGCAGCCCG TGCCGCTCGA GTTCCTGATG CGAAGCCGTG TAGACCTGGA AGAAGGACGC 
ATCGAGATCG TGGACATGGC GCAAAACCCA AGGTGA 

 

Protein sequence

MAELTAQERL QPSLLDRLVD DAPTEKRESD DKRTLTKQAL RSAVLRDLSW LFNATGFGLA 
MDDKQYPNAA RSVINYGLPM LSGQFTSSVQ RVSMEQALKN AILQFEPRIL SRTLEVELVM 
EGSALDSHNS IGLQIRGMLW AQPVPLEFLM RSRVDLEEGR IEIVDMAQNP R