| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Vapar_0525 |
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| Symbol | |
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| ID | 7972935 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Variovorax paradoxus S110 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_012791 |
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| Strand | + |
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| Start bp | 579066 |
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| End bp | 579902 |
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| Gene Length | 837 bp |
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| Protein Length | 278 aa |
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| Translation table | 11 |
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| GC content | 70% |
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| IMG OID | 644791128 |
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| Product | virulence protein SciE type |
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| Protein accession | YP_002942454 |
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| Protein GI | 239813544 |
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| COG category | [R] General function prediction only |
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| COG ID | [COG4455] Protein of avirulence locus involved in temperature-dependent protein secretion |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 15 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGGCCAGCT CCGCCGAACT CCTCAAGTCC GCCGACCCCG TCGCCGCGCT CAAGGCCCTG
AGCGACGAGG TCCGCGCCAA GCCCGCCGAC AGCAAGCACC GCGTCTTCAT GGCGCAGCTG
CTGTGCGTGC TGGGCCAGTG GGAACGCGCG CTCAACCAGC TCACTGTCGC AGCCGAGCTC
GATGCGCTCG CCGTTCCCAT GAAGCAGGTG TATGGCGACG CCGTGCGCTG CGAAGGCCTG
CGCGCCGAGG TGTTCGCCGG CACGCGCACG CCGATGATCT TCGGCCAGCC CGACGAATGG
CTGGCGCTGC TGATCGAATC GCTGCTGCGC CAGGGCCGCG GCGAGAGCGA GCTGGCCGAA
GACCTTCGCC AGCGGGCCTT CGACGGCGCA CCCGCCATCG CCGGCACCAT CGACGGCGTG
CCCTTCGAAT GGCTGGCCGA TGCCGACATG CGCCTGGGCC CGGTGCTCGA AGCCTTCGTC
AACGGCAAGT ACTACTGGAT TCCCTACGCC CGGCTCGCGC ACATCAAGAT CGAGCCGCCC
GAAGACCTGC GCGACTGCGT CTGGATGCCC GCCCACCTGC AGTTCGAGAA CGGCGGCGAG
ACGCTGGCGC TCATTCCCAC CCGCTACGAA GGCACCGAGC AGAGCGAGGA TGGCGAGCTG
CGGCTCGCGC GCAAGACCGA GTGGCGCGAA CTGCGCCCCG AGGTCTGGGC CGGCCGCGGC
CAGCGCGTGC TCGGCAGCGA CGCCGGCGAG TACGCGCTCA TGGACGTGCG CGAGATCCTT
TTCACGCCCA CTGCCTCTGC CGCAGCGCAG GACGGCCCCG GCGACGCAGG CGGCTGA
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| Protein sequence | MASSAELLKS ADPVAALKAL SDEVRAKPAD SKHRVFMAQL LCVLGQWERA LNQLTVAAEL
DALAVPMKQV YGDAVRCEGL RAEVFAGTRT PMIFGQPDEW LALLIESLLR QGRGESELAE
DLRQRAFDGA PAIAGTIDGV PFEWLADADM RLGPVLEAFV NGKYYWIPYA RLAHIKIEPP
EDLRDCVWMP AHLQFENGGE TLALIPTRYE GTEQSEDGEL RLARKTEWRE LRPEVWAGRG
QRVLGSDAGE YALMDVREIL FTPTASAAAQ DGPGDAGG
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