| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Vapar_0515 |
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| Symbol | |
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| ID | 7972925 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Variovorax paradoxus S110 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_012791 |
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| Strand | + |
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| Start bp | 564578 |
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| End bp | 565906 |
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| Gene Length | 1329 bp |
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| Protein Length | 442 aa |
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| Translation table | 11 |
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| GC content | 72% |
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| IMG OID | 644791118 |
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| Product | type IV / VI secretion system protein, DotU family |
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| Protein accession | YP_002942444 |
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| Protein GI | 239813534 |
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| COG category | [S] Function unknown |
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| COG ID | [COG3455] Uncharacterized protein conserved in bacteria |
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| TIGRFAM ID | [TIGR03349] type IV / VI secretion system protein, DotU family
[TIGR03350] type VI secretion system OmpA/MotB family protein |
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Plasmid Coverage information |
| Num covering plasmid clones | 18 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGACAACAC CCGATCCCTT CGCCGCCTTC GAGTCGGAGC GCACGGTCAT CAAGCCCAAG
CCGCGCACGC CGGCCGGCAC GCCGCCCGCG CCGGCTCCCG CACCGTTCTT CGGCGGCGCT
GATCCGACGC CGGCCGTCGA CGTCGGCGAG ATCGGCCTGC TCAATCCGCT GGTCTCGGCC
GCGGGCAAGC TGCTGGTGCT GATCGGAAAG CTGCGCAACC TGGTGCAGCC GCCCAACGTG
CCGGCCCTGC GCGCCTCCAC CGCCGACGCG GTGAACCAGT TCGATGCCGC CGCGCGCCGC
GCCGGCGCCA GCAACGAATC GGTGCTGGCC GCACGCTACG TGCTGTGCAC CGCGCTGGAT
GAAGCCGTGG CCAACACGCC CTGGGGCGTG CAGGCCGGCT GGAACAAGCA GAGCCTCTTG
GTGCAGTTCC ACAACGAGAC CTGGGGCGGC GAGAAGGTGT TCCAGCTGCT CGCCAAGCTC
GCGCAGGACG TGCCCACGCA CCGCCAGCTG CTGGAGCTGA TCTACAGCGT GCTCGCGCTC
GGCTTCGAAG GCCGCTACCG CGTGGTCGAC AACGGCCGCG CGCAGCTCGA TTCGGTGCGC
CAGCGCCTGG CCGACCTGAT CGCCAAGGAT CGCCCGCCGC TCGAAGCCGA GCTTTCGCCG
CACTGGCGCG GGCAGGGCGC GGGCACGGTG CGGCTGCGCG AATCGCTGCC GCTGTGGGTG
TTCGCGGCCG GCTTCGCGCT GCTGCTCGCG CTGGCCTGGT TTGGCCTGCG GCTCACGCTC
AACTACCGCT CCGACACCAC CTATGCCGCG GTGTCGGGCC TGCGCGTGCC CAACCTCCAG
ATCGCGCCGC CTGCCGCGCC GGCCAAGTCG CCGCGGCTCG CGCGCTTTCT CGAGCCCGAG
ATCAAGCAGG GCCTGGTCAC CGTGACCGAC GAGGCCGACC GCAGCGTGGT GCGGCTGCGC
GGCGATTCCT TCTTCGGCTC CGGCAGCGCC GAGCCCATGG CGGCCTCGCT GCCGGTGCTG
CGCCGCATCG GCCAGGCGCT GGCCGAGGTG AAGGGCGAGG TGCTGATCAC CGGCCACTCC
GACAACCAGC CGATCCGCTC GCTGCGCTAT CCCTCCAACT GGCACCTGTC GGCGGCGCGC
GCCGATGCGG TGAAAGGCGC ACTCACCACG CTGGTCGAGC CGGCGCGCAT GCGCTCCGAC
GGCAAGGCCG ACGCCGAGCC CGTGGCCGCC AACGACACGC CGGCCAACCG CGCGCGCAAC
CGGCGGGTGG ACATCGTGCT CTTGTCCGAG CCGGACCGCG TGGCTGCCGC GGCGGGAGTG
ACGAAATGA
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| Protein sequence | MTTPDPFAAF ESERTVIKPK PRTPAGTPPA PAPAPFFGGA DPTPAVDVGE IGLLNPLVSA
AGKLLVLIGK LRNLVQPPNV PALRASTADA VNQFDAAARR AGASNESVLA ARYVLCTALD
EAVANTPWGV QAGWNKQSLL VQFHNETWGG EKVFQLLAKL AQDVPTHRQL LELIYSVLAL
GFEGRYRVVD NGRAQLDSVR QRLADLIAKD RPPLEAELSP HWRGQGAGTV RLRESLPLWV
FAAGFALLLA LAWFGLRLTL NYRSDTTYAA VSGLRVPNLQ IAPPAAPAKS PRLARFLEPE
IKQGLVTVTD EADRSVVRLR GDSFFGSGSA EPMAASLPVL RRIGQALAEV KGEVLITGHS
DNQPIRSLRY PSNWHLSAAR ADAVKGALTT LVEPARMRSD GKADAEPVAA NDTPANRARN
RRVDIVLLSE PDRVAAAAGV TK
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