| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Vapar_0513 |
|---|
| Symbol | |
|---|
| ID | 7972923 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Variovorax paradoxus S110 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_012791 |
|---|
| Strand | + |
|---|
| Start bp | 562012 |
|---|
| End bp | 563070 |
|---|
| Gene Length | 1059 bp |
|---|
| Protein Length | 352 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 72% |
|---|
| IMG OID | 644791116 |
|---|
| Product | phosphonate ABC transporter, periplasmic phosphonate-binding protein |
|---|
| Protein accession | YP_002942442 |
|---|
| Protein GI | 239813532 |
|---|
| COG category | [P] Inorganic ion transport and metabolism |
|---|
| COG ID | [COG3221] ABC-type phosphate/phosphonate transport system, periplasmic component |
|---|
| TIGRFAM ID | [TIGR01098] phosphate/phosphite/phosphonate ABC transporters, periplasmic binding protein |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 14 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGTCCATGT CCATGCTGCG TCTCCTGCGT TCGGTTGCCG CGGCGCTCGC GCTCTTGGCC
GTTGCCGCGG CCTGCCTGGC GCAGGGCGGT GCCGCCACGG CGGACAAGGC GGTTGCTGCG
CCGGTCAAGT CGATCCGCTT CGGCGTGCTG CCGCTGGGCG GCGCGGTCGA ATCGCGCGCC
CTGTGGACGC CGCTCCTGGC CGGCCTGAGC CAGGCCATGG GCGTGCCCGT GAGCGCCTAC
TCGGTGGCGT CGTACGAGGA ACTCGACCGC GCCATCAAGC GCGACGAGAT CGACATGGCC
TTTCTCTCGG CCAAGATGGC GCTCGACGCC GTGATGCAGC GGCGCATGAA GGTGGTGGCG
CAGATCGCGC GCCGGCCCGG CATGCCGACC CACCGCGCCG TGCTGCTGAC GCGCAAGGCC
GGCCTGCCCA GCACGCTGGA GGCCGTGCTC GCCGAGCCCG AGCGCTGGCG GCTGGCGCGC
GGCGACAGCC GCTCCGTGAC CGGCTTCCTC ATTCCGCAGA GCCAGTTGTT CCTGCCGCGC
GGGATCGCGA TGGAAACGCG CTTTCGCGGC GAGATCGTCG GCACCCACCA GGCCACCGCG
CTGGCCGTGG CCAACGGCGA TGCCGACGTG GCCACCAACA ACACCACCGA CTTCGAGCGC
TTCAGGGAGC AGTTCCCGGT GGAGGCCGCG CGGCTGCACA TCGTGTGGGA GTCCGAGCCG
CCGCCCGGTG CGCAGATGGT GGTGCGGCGC AGCTATCCGC CCGAGTTCCA GGCCCGGCTG
CAGGCCTTCC TGGTGGGCTA CGGCCAGGGC AAGGGCCCCG GCGCCGATGC CGAGCGCGAG
GTGCTGAAGA CCCTGCGCGC GGCCTACGGC TATGCCCCCG CCGACGACAG CGCGCTGCTG
GCCGAGGCCA TGCTCGAATA CCAGCTCGGC AAGCAAAGCG CCATGGCCGC CGCCTGGGTC
AACGACGCCG CGCGCGAGAA GCGCCTGCAG CGCATCGAGA AGAACTACCG GGAACAGGTC
GAGGCCCTGA GCGCCGCCGC CAGTTCTGGC GCGCGCTGA
|
|---|
| Protein sequence | MSMSMLRLLR SVAAALALLA VAAACLAQGG AATADKAVAA PVKSIRFGVL PLGGAVESRA
LWTPLLAGLS QAMGVPVSAY SVASYEELDR AIKRDEIDMA FLSAKMALDA VMQRRMKVVA
QIARRPGMPT HRAVLLTRKA GLPSTLEAVL AEPERWRLAR GDSRSVTGFL IPQSQLFLPR
GIAMETRFRG EIVGTHQATA LAVANGDADV ATNNTTDFER FREQFPVEAA RLHIVWESEP
PPGAQMVVRR SYPPEFQARL QAFLVGYGQG KGPGADAERE VLKTLRAAYG YAPADDSALL
AEAMLEYQLG KQSAMAAAWV NDAAREKRLQ RIEKNYREQV EALSAAASSG AR
|
|---|
| |