Gene Vapar_0508 details

Gene Information

• Locus tag: Vapar_0508
• ID: 7972918
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Variovorax paradoxus S110
• Kingdom: Bacteria
• Replicon accession: NC_012791
• Strand: -
• Start bp: 555613
• End bp: 557604
• Gene Length: 1992 bp
• Protein Length: 663 aa
• Translation table: 11
• GC content: 75%
• IMG OID: 644791111
• Product: histidine kinase
• Protein accession: YP_002942437
• Protein GI: 239813527
• COG category: [T] Signal transduction mechanisms
• COG ID: [COG0642] Signal transduction histidine kinase

Plasmid Coverage information

• Num covering plasmid clones: 8
• Plasmid unclonability p-value: 0.217821
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGAGCGAGA CGCTGCCCTC CGCGGGCGGG CGCGCCGATG CAGCGCCGCC GCCCTCTGCG 
CCAACGCCCA CGCTGCTGGT GCGCGGCAAC CTGCAGCGCG ACCTGTTCCG CCTTGGCGTG 
GTGCCGTGCG CCGCGGTGGC GCTCGCGCTC ACCGGCTGGT TCACGCACAG CCGGCTGCAG 
ACGCTGGAGG CCGCCTTCGA CGCCGAGGGC CAGGCGGTGG CGCGCCAGGT GGCGGCCATG 
TCCGACCTGA GCCTTTATGC CGGCGACCTG CCGGCGCTGC AGAACGTGGC CAATGCCGCG 
CTGCGCGGCG GCCAGGTGAT GCGCGTGGAA ATCAGCAACA GCGCCGGCGT CTACGTGACG 
GCCGGCCCCA AGGCCTCGTC GCTTGCGCAG CTGCGCATGT TCACCTCGCC GGTCACGCTG 
CGCGAGGCCT CGCGCGCCAG CGCCTTCGCG CCGGCCGGCT CCACCGCCGC CGGCGACGCG 
CCCATCGGCC TGGTGCAGAC CTTCCGCGAC ACCACGGCCT ATGCGCGCGA ACGCAGCCGC 
TCGCTGATCG CGAGCATCGG CATCGCGCTG GTGGCGCTGC TCGCGGCCTG GGCCTCGGTG 
CGCCACATGG CGCGCACGGT GGCGCGGCCG CTGCGGCGCA TCTCGCGCAC CGTGGCCGCG 
CTCGAAGCCG GCCACTTCGA GGCGCGCTGC GACGTGGCCG AGGGCGACAG CCGCGCGTCC 
GCCGGCGGCG CCGGCAAGGG CCGCGCGCAC GAGCTCACGG TGCTCGCGCA CGACATCGAC 
CGCCTGGCCG AGCGCCTGCA GCGCAACCGG CAGATCAGCG AGGAGCGCGT GCGCGAGGCC 
ACCGCGGTGG CGCTGCAGCG CATGGCCGAG GCCGAGCAGG CCGCACTCTC GCGCGCCCGC 
TTCCTGGCCG CGGCCAGCCA CGACCTGCGC CAGCCGCTGC ATGCCATGGG CCTGTTCATC 
GACGGCCTGC TGCCGGGCGC CAGCGCCGCG CAGCGCCCCG CCATGCTGCG GCTGCAGGAG 
AGCACCGAGT TCATGGGCGT GCTGCTGGAC GACCTGCTGG AGATCTCGCG GCTCGATGCC 
CAGGTGCTGA CGCCGGCGAT CACCAAGGTG CCGCTCGCGG CGCTGTTCGA CCAGCTCGAT 
GCGCAGCATG CCGCCACCGC GGTGGAAACC CACGTGCGCC TGCGCTGGAG CGACCGCGGC 
CTGGCGGTGC GCAGCGATGC GGCGCTGCTG CAGCGCATCG TCGGCAACCT GGTGGCCAAC 
GCACTGCGCC ATGCGCCGGC CGGCGGCACC GTGCTGGTGG CCGCGCGCCG CGCCCGCGGA 
AGGAACGGCG ACAGCGTGCG CATCGAGGTG CGCGACAACG GCATCGGCAT TGCGCCCATC 
CACCAGGGCC GCATCTTCGA GGAGTTCTAC CAGGTGGCCA ACACCGAGCG CGACCGCCGC 
CGCGGCTTCG GCCTGGGCCT GGCGATCTGC GCGCGCATCG CGGCGCTGCT GGGCACCCGC 
ATCACGCTGC GCTCGGCGCT GCAGGCGGGC AGCACCTTTG CGCTCACGCT GCCCGCGGCC 
CATGCGGCCG ACGCCACGGC GCCCGAGCCC GCGCCGCTGG CGCTGACGCC GCTGGCCGGC 
CTGCACTGCA TGGTGGTGGA CGACGACCCC GCCATCCTCG ACGGCAGCCG AGCGCTGCTG 
GAGCAATGGG GCTGCCAGGT CGAATGCGTG GCCACCGGCG CCGAGGCCAT CGCGCGGCTG 
GGCACGGGCG ACGTGCATTT CGACGCGGTG CTGTGCGACC TGCAATTGGC CGGCGACGCC 
GACGGCATGG AGGTGATCGA TGCCGCCCGG CGCCTGCAGC CCGATGCGCT CGCGGTGCTG 
GTCTCGGGCG CCACCGGGCC CGAGGTGCTG CAGCGGCTGC GCCACGGCGG CGTGATGCTG 
CTGACCAAGC CGGTCGCGCC GGCCAAGCTG CGCGCACTGC TCACCACGCG GCGCCATGCG 
CACGCGGCCT GA 

 

Protein sequence

MSETLPSAGG RADAAPPPSA PTPTLLVRGN LQRDLFRLGV VPCAAVALAL TGWFTHSRLQ 
TLEAAFDAEG QAVARQVAAM SDLSLYAGDL PALQNVANAA LRGGQVMRVE ISNSAGVYVT 
AGPKASSLAQ LRMFTSPVTL REASRASAFA PAGSTAAGDA PIGLVQTFRD TTAYARERSR 
SLIASIGIAL VALLAAWASV RHMARTVARP LRRISRTVAA LEAGHFEARC DVAEGDSRAS 
AGGAGKGRAH ELTVLAHDID RLAERLQRNR QISEERVREA TAVALQRMAE AEQAALSRAR 
FLAAASHDLR QPLHAMGLFI DGLLPGASAA QRPAMLRLQE STEFMGVLLD DLLEISRLDA 
QVLTPAITKV PLAALFDQLD AQHAATAVET HVRLRWSDRG LAVRSDAALL QRIVGNLVAN 
ALRHAPAGGT VLVAARRARG RNGDSVRIEV RDNGIGIAPI HQGRIFEEFY QVANTERDRR 
RGFGLGLAIC ARIAALLGTR ITLRSALQAG STFALTLPAA HAADATAPEP APLALTPLAG 
LHCMVVDDDP AILDGSRALL EQWGCQVECV ATGAEAIARL GTGDVHFDAV LCDLQLAGDA 
DGMEVIDAAR RLQPDALAVL VSGATGPEVL QRLRHGGVML LTKPVAPAKL RALLTTRRHA 
HAA