| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Vapar_0502 |
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| Symbol | |
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| ID | 7972912 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Variovorax paradoxus S110 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_012791 |
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| Strand | + |
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| Start bp | 543043 |
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| End bp | 545196 |
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| Gene Length | 2154 bp |
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| Protein Length | 717 aa |
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| Translation table | 11 |
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| GC content | 71% |
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| IMG OID | 644791105 |
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| Product | Tetratricopeptide domain protein |
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| Protein accession | YP_002942431 |
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| Protein GI | 239813521 |
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| COG category | [S] Function unknown |
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| COG ID | [COG4995] Uncharacterized protein conserved in bacteria |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 13 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGACGTGGT TTTCGAGAAG AACGGAACGG GAGCGCTCGG CACGTCGTGC AGGGGCCGCG
GGTGCGCTGG GGCTGGCAGC CATTCTTCTG CTGGGCCATG GGTCCCCGGC ATCGGCGCAG
CAGCCACAGC AGGCGCCGAA TGCCGAAGCC GCGGCCGGCA GGGCGGAGCA GGCCCGTCTT
GCCGACACCG ACACCTTGCT CGCATTGACC AGCGAGGGCG CGGTGCTCTA CGGGCAGGAT
GCGGTCAAGC TGTCCGGCTA CCAGTACTGC AGCCAGGCGG TGGCGCTGGC CGAGGCCGGC
GAATTCCGCC AGAGCGTGCG CGCCGCCAGC AAGGCGCTGC ACCTGGCCAA TGCCACGAGC
GATCCCAACC TGCTGGCCAT GGCCAACCGC GACCTGGCCA TCGTCTACAG CTATTCGGGC
CAGCTCGAGA AGGCCGAGGA ATTCGCGCGC GAGGCGCTCA AGCATCCGGC GCGCGATCCC
AAGCTGGTGG TCGGCCCGGT GCAGAAGGTG ATCGGCGACG TGCGCACCCG CCGCGGCGAC
TACGCGGGCG CCGTCATCAG CTATGACGAG GCGCTGGCCA ACAGCTCGTC GCGCTATGCG
CCGCTGGTGC AGGCCTCGCT CGTCAATGCG CTGATCGAAT CGGGCGACGC CGCCAGGGCG
CGCGAAGTGC TCGGGGGCAT GGCGCCGCCC CGGGACGCGC CGCTCACGGC GCAGCTCGAC
CGCACCCGCG CGCGGCTGCT GCTGGCCGAG AACAAGCCGG CCGAGGCGCG CGACCTCTAC
CGCGCGCTCA CCGCGCGGCA GGTCGGCACC GACACCGAGT ACTACCGCCT CTGGGCCTGG
GACGGCGTGG CGCGCAGCGA ACTTGCGCTC GGCCAGAAGC AGGCCGCGGC CGAGGCCGTG
GCGCGCGCGC TGGGCGGCAT CGACCAGGTG CGCGCCAGGT TCCGCAGCGA AGAATTCAAG
ATGGGCCTGT TCTCCGACCT GCAGTCGGTG TTCGAGCGCG GCGTCTCGAT CTACAGCGAC
GCGGGCGATG CGCGCCAGGC CTTCGAGGTG AGCGAGCGCA GCCGCTCGCG CGCGCTGCTC
GATGCGGTGC GCGGCCGCGC GAAGATCAAC GAGCGCGCCG CGACCACCGT GGACCTGGCC
GCGCTGCAGG GCATGCTCGC GCCCGACGAG CGCGTGGTGC AGTTCCATTC GCTGCCCGAC
CGGCTGCTGG TGTGGGTGGT CGGCCCGGCC GGCATCGAGG CCAGGACGGT GCCGGTGCGC
CGCGAGGAGC TCACCGAGCT GGTCGAGGTG TTCCGCAACT CCATCGTGCG CGGCCGCCGC
GCGGCCATCA CCAATGCCGA CAAGCTCGGC GCCGCGCTGC TCGGCCCGCT GGGCCTGGCG
CCGGGGCAGC GGCTGATCGT GGTGCCGCAC GGGCCGCTGC ACTACCTGCC GTTCCAGGCG
CTGCGGCTCG ACGGGCGCTA TGTGATCGAG ACGCATCCGG TGGCGGTGGC GCCATCGATC
AGCATCGCGG TGCAGCTCGC GCAGCGCTCG CCGCGCGTGG GCGCGTCGCT CACGGCCTTC
GGCAACCCGC GCATCGAGGA CAAGTACGAC CTGCCGGGCG CCGAGGTCGA GGTGAAGCAG
CTCGCGCAGC TGTTCCCGCG CAACGCCGTG TACATGGGCG CCGCGGCCAC CAAGACGCAG
TTCCGCGACG TGGCCGCGCG CTCGCCGCTG ATGCACGTGG CGGCGCATGC CGAGGCCGAC
GCGGTGGATC CGCTGTACTC GCGCATCCTG CTGGCCAACG AGGGCGGCAA GCAGAATTTC
CTGGAGGCGC ACGAGATCCT CGGCCTGCCG ATGGACGGCA CGGCGCTGGT CACGCTCTCG
GCCTGCGAGT CGGGGCTCGG GCGCATCGCG CAGGGCGACG AGGTGCTGGG CTTCACGCGC
TCCTTTCTCT CGGCCGGCAG CTCGAGCCTG ATCGCATCGC TGTGGCCGGT GTCGGACGAC
GCAACCGCGG TGCTCATGGG CACGCTCTAC GGCGAGCTGG CCAAGGGCCG CGACATCCAG
AAGGCGATGC AGGCCGGGCA GCTGGCGGTG CTGAAGGATC CCAAGATGTC CCACCCCTTC
TTCTGGGCGC CGTTCAACCT GATCGGCAAC TGGCGTCTCA CGGTGGGGAG CTGA
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| Protein sequence | MTWFSRRTER ERSARRAGAA GALGLAAILL LGHGSPASAQ QPQQAPNAEA AAGRAEQARL
ADTDTLLALT SEGAVLYGQD AVKLSGYQYC SQAVALAEAG EFRQSVRAAS KALHLANATS
DPNLLAMANR DLAIVYSYSG QLEKAEEFAR EALKHPARDP KLVVGPVQKV IGDVRTRRGD
YAGAVISYDE ALANSSSRYA PLVQASLVNA LIESGDAARA REVLGGMAPP RDAPLTAQLD
RTRARLLLAE NKPAEARDLY RALTARQVGT DTEYYRLWAW DGVARSELAL GQKQAAAEAV
ARALGGIDQV RARFRSEEFK MGLFSDLQSV FERGVSIYSD AGDARQAFEV SERSRSRALL
DAVRGRAKIN ERAATTVDLA ALQGMLAPDE RVVQFHSLPD RLLVWVVGPA GIEARTVPVR
REELTELVEV FRNSIVRGRR AAITNADKLG AALLGPLGLA PGQRLIVVPH GPLHYLPFQA
LRLDGRYVIE THPVAVAPSI SIAVQLAQRS PRVGASLTAF GNPRIEDKYD LPGAEVEVKQ
LAQLFPRNAV YMGAAATKTQ FRDVAARSPL MHVAAHAEAD AVDPLYSRIL LANEGGKQNF
LEAHEILGLP MDGTALVTLS ACESGLGRIA QGDEVLGFTR SFLSAGSSSL IASLWPVSDD
ATAVLMGTLY GELAKGRDIQ KAMQAGQLAV LKDPKMSHPF FWAPFNLIGN WRLTVGS
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