| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Vapar_0498 |
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| Symbol | |
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| ID | 7972908 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Variovorax paradoxus S110 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_012791 |
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| Strand | + |
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| Start bp | 538471 |
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| End bp | 539367 |
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| Gene Length | 897 bp |
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| Protein Length | 298 aa |
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| Translation table | 11 |
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| GC content | 73% |
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| IMG OID | 644791101 |
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| Product | DNA polymerase LigD, polymerase domain protein |
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| Protein accession | YP_002942427 |
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| Protein GI | 239813517 |
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| COG category | [L] Replication, recombination and repair |
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| COG ID | [COG3285] Predicted eukaryotic-type DNA primase |
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| TIGRFAM ID | [TIGR02776] DNA ligase D
[TIGR02778] DNA polymerase LigD, polymerase domain |
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Plasmid Coverage information |
| Num covering plasmid clones | 18 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGGCCACGG CGCAGAAGGC GCCGCGCATC ACCCACGCGG AGCGCCTGAT CGACGCCGCC
AGCGGCCTCA CCAAGGGCGA TCTCGCGGCC TACTACGCGC GCGTCGCGCC GCTGATGCTG
CCGCACCTCG AAGGGCGGCC GGTGGCGCTG GTGCGCGCGC CCGACGGCGT GGGCGGCGAG
CTGTTCTTCC AGAAGCATGC GCAGCACAGC GACATCGCGG GCATCAAGCT GCTCGATCCC
GCGCTCGACC CGGGCCACGA CCCGCTGCTG CAGATCGACA CCGCAGAGGC GCTGGTCGGC
GCGGCGCAGT TCAACACCGT CGAGCTGCAC ACCTGGAACG CCACCTCGCG CGCCCTCGGC
AAGCCCGACC GCATGACCTT CGACCTCGAC CCCGGCGAAG GCATCGACTG GCAGCAGATG
CAGGAGGCGG CGCTGCTGGT GCGCGTGCTG CTCGACGAGC TCGGCCTGCC GTCGTTCCTC
AAGACCAGCG GCGGCAAGGG GCTGCACGTG GTGGTGCCGC TGCGGCGCCA GTTCGGCTGG
GACGAGGTGC GCGGCTTCTC GCGGGCCATC GTCGAGCACC TGGCGCGCAC CGTGCCCGAG
CGCTTCGTGG CCAAGAGCGG GCCGCGCAAC CGCGTGGGCC GGATCTTCGC GGACTACCTT
CGCAACGGCT TCGGCGCCAC CACCGTGAGC GCATGGTCGG CGCGCGCGCG GCCGGGCATG
GGCGTGTCGG TGCCGCTCGC CTGGGAAGAG CTGCCCGACC TGGACAGCGC CGCCCACTGG
ACGGTGGCGA ACATCGGCCC GCGCCTGGCC ACCGGCAACA CGCCCTGGGA CGCGATGGAG
CGCAGCCGCA CCGGCCTTCG CGCCGCGATG CAGATGCTCG GCTTCCTGCC CGCGTAG
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| Protein sequence | MATAQKAPRI THAERLIDAA SGLTKGDLAA YYARVAPLML PHLEGRPVAL VRAPDGVGGE
LFFQKHAQHS DIAGIKLLDP ALDPGHDPLL QIDTAEALVG AAQFNTVELH TWNATSRALG
KPDRMTFDLD PGEGIDWQQM QEAALLVRVL LDELGLPSFL KTSGGKGLHV VVPLRRQFGW
DEVRGFSRAI VEHLARTVPE RFVAKSGPRN RVGRIFADYL RNGFGATTVS AWSARARPGM
GVSVPLAWEE LPDLDSAAHW TVANIGPRLA TGNTPWDAME RSRTGLRAAM QMLGFLPA
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