Gene Vapar_0489 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagVapar_0489 
Symbol 
ID7970230 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameVariovorax paradoxus S110 
KingdomBacteria 
Replicon accessionNC_012791 
Strand
Start bp529192 
End bp530169 
Gene Length978 bp 
Protein Length325 aa 
Translation table11 
GC content72% 
IMG OID644791092 
Producttranscriptional regulator, AraC family 
Protein accessionYP_002942418 
Protein GI239813508 
COG category[K] Transcription 
COG ID[COG4977] Transcriptional regulator containing an amidase domain and an AraC-type DNA-binding HTH domain 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones13 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGGATCGAA AAACCCTGGA AACCATCGCC GTCGTCGCCT TCGACGGCAT CAGCCCCTTT 
CACCTGTCGG TGCCGTGCAT GGTCTTCGGC GAAGACCGCA CGGAAGCGGG CGACCCGCGT
TTTCGCCTGC AGGTGTGCGG CACCGAGCCG GGCCCGCTGC ACACCAATGC GGGCTTCACG
CTCGGGGTGC CGCACGGGCT CGAGGCGATC CGGCGTGCGC AGATCGTGAT CGTGCCCTCA
TGGTGCGACG ACGGCCGGCC CGCGCCGCCG GCGCTGATCC GCGCGCTGCA GGCGGCGCAC
CGGCGCGGCG CCATCGTGGT CGGGCTGTGC CTGGGCGCCT TCGTGTTGGC CGAGGCGGGC
CTGCTCGATG GCCGCCCGGC CACCACGCAC TGGAACCTGG CCGAAGCCTT TGCCAGGCAA
TATCCGAAGG TCAGGCTGCA GCCCGAGGTG CTGTATGTCG ACGACGGCGA CGTGCTCACC
TCGGCCGGCA CGGCCGCGGG CATCGACTGC TGCCTTCACC TGCTGCGCGT GCGCCATGGC
GCCGAGGCGG CGAACCGCGC CGCGCGGCGC ATGGTGGTGG CGCCGCACCG GCAGGGCGGA
CAGGCGCAGT ACATCCGCCA GCCGATGCCC GCCGCGGCCG AGGGCGATCG CCTTGCGCCG
CTGCTCGAAT GGCTGGGCCG CCACCTCCAG AGCCCGCATG AACTCGACAG CCTCGCGCGG
CGCGCACTGA TGAGCCGGCG CACCTTCACG CGGCGCTTTC GCGAGGCCAC GGGCACCACC
GTCGGCCAAT GGCTGCAGAA CCAGCGGCTC GCGCTCGCGC AGCGGCTGCT GGAGACCACC
GACCGGCCGG TGGAACGCGT GGCCACCGAC GTGGGCTTCG GCTCGGCAGT GTCGCTGCGA
AAGCACTTCG CGGCGGCGTT CAAGGTGTCG CCCACGGCCT ACCGCAGGCA GTTCTCGCAG
GAGGCGGTGG CGGCCTAG
 
Protein sequence
MDRKTLETIA VVAFDGISPF HLSVPCMVFG EDRTEAGDPR FRLQVCGTEP GPLHTNAGFT 
LGVPHGLEAI RRAQIVIVPS WCDDGRPAPP ALIRALQAAH RRGAIVVGLC LGAFVLAEAG
LLDGRPATTH WNLAEAFARQ YPKVRLQPEV LYVDDGDVLT SAGTAAGIDC CLHLLRVRHG
AEAANRAARR MVVAPHRQGG QAQYIRQPMP AAAEGDRLAP LLEWLGRHLQ SPHELDSLAR
RALMSRRTFT RRFREATGTT VGQWLQNQRL ALAQRLLETT DRPVERVATD VGFGSAVSLR
KHFAAAFKVS PTAYRRQFSQ EAVAA