Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Vapar_0489 |
Symbol | |
ID | 7970230 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Variovorax paradoxus S110 |
Kingdom | Bacteria |
Replicon accession | NC_012791 |
Strand | + |
Start bp | 529192 |
End bp | 530169 |
Gene Length | 978 bp |
Protein Length | 325 aa |
Translation table | 11 |
GC content | 72% |
IMG OID | 644791092 |
Product | transcriptional regulator, AraC family |
Protein accession | YP_002942418 |
Protein GI | 239813508 |
COG category | [K] Transcription |
COG ID | [COG4977] Transcriptional regulator containing an amidase domain and an AraC-type DNA-binding HTH domain |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 13 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGGATCGAA AAACCCTGGA AACCATCGCC GTCGTCGCCT TCGACGGCAT CAGCCCCTTT CACCTGTCGG TGCCGTGCAT GGTCTTCGGC GAAGACCGCA CGGAAGCGGG CGACCCGCGT TTTCGCCTGC AGGTGTGCGG CACCGAGCCG GGCCCGCTGC ACACCAATGC GGGCTTCACG CTCGGGGTGC CGCACGGGCT CGAGGCGATC CGGCGTGCGC AGATCGTGAT CGTGCCCTCA TGGTGCGACG ACGGCCGGCC CGCGCCGCCG GCGCTGATCC GCGCGCTGCA GGCGGCGCAC CGGCGCGGCG CCATCGTGGT CGGGCTGTGC CTGGGCGCCT TCGTGTTGGC CGAGGCGGGC CTGCTCGATG GCCGCCCGGC CACCACGCAC TGGAACCTGG CCGAAGCCTT TGCCAGGCAA TATCCGAAGG TCAGGCTGCA GCCCGAGGTG CTGTATGTCG ACGACGGCGA CGTGCTCACC TCGGCCGGCA CGGCCGCGGG CATCGACTGC TGCCTTCACC TGCTGCGCGT GCGCCATGGC GCCGAGGCGG CGAACCGCGC CGCGCGGCGC ATGGTGGTGG CGCCGCACCG GCAGGGCGGA CAGGCGCAGT ACATCCGCCA GCCGATGCCC GCCGCGGCCG AGGGCGATCG CCTTGCGCCG CTGCTCGAAT GGCTGGGCCG CCACCTCCAG AGCCCGCATG AACTCGACAG CCTCGCGCGG CGCGCACTGA TGAGCCGGCG CACCTTCACG CGGCGCTTTC GCGAGGCCAC GGGCACCACC GTCGGCCAAT GGCTGCAGAA CCAGCGGCTC GCGCTCGCGC AGCGGCTGCT GGAGACCACC GACCGGCCGG TGGAACGCGT GGCCACCGAC GTGGGCTTCG GCTCGGCAGT GTCGCTGCGA AAGCACTTCG CGGCGGCGTT CAAGGTGTCG CCCACGGCCT ACCGCAGGCA GTTCTCGCAG GAGGCGGTGG CGGCCTAG
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Protein sequence | MDRKTLETIA VVAFDGISPF HLSVPCMVFG EDRTEAGDPR FRLQVCGTEP GPLHTNAGFT LGVPHGLEAI RRAQIVIVPS WCDDGRPAPP ALIRALQAAH RRGAIVVGLC LGAFVLAEAG LLDGRPATTH WNLAEAFARQ YPKVRLQPEV LYVDDGDVLT SAGTAAGIDC CLHLLRVRHG AEAANRAARR MVVAPHRQGG QAQYIRQPMP AAAEGDRLAP LLEWLGRHLQ SPHELDSLAR RALMSRRTFT RRFREATGTT VGQWLQNQRL ALAQRLLETT DRPVERVATD VGFGSAVSLR KHFAAAFKVS PTAYRRQFSQ EAVAA
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