| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Vapar_0485 |
|---|
| Symbol | |
|---|
| ID | 7970226 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Variovorax paradoxus S110 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_012791 |
|---|
| Strand | + |
|---|
| Start bp | 525253 |
|---|
| End bp | 526713 |
|---|
| Gene Length | 1461 bp |
|---|
| Protein Length | 486 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 75% |
|---|
| IMG OID | 644791088 |
|---|
| Product | major facilitator superfamily MFS_1 |
|---|
| Protein accession | YP_002942414 |
|---|
| Protein GI | 239813504 |
|---|
| COG category | [G] Carbohydrate transport and metabolism |
|---|
| COG ID | [COG2814] Arabinose efflux permease |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 15 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGCCTGCCG CCTCATCCAA CGCCCCTGCC TCGCTCCACC CCGCTTCGCC CGCTGCCGAT
TGGAGCGAAC TGTTCAGCGG GCGCAACGGC TGGCGCGCGC TGGCGCTCAC GGGCGGCGTT
GCGCTGCATG CGGTCAACGT GCACATCGTG ACGACCGTGC TGCCCTCGGT GGTGAACGAG
ATCGGCGGGC TCGACTGGTA CGCCTGGAGC ACCACGCTGT TCGTGGTGGG ATCGATCCTC
GGCGCCACGC TGTCGGTGCG GCTGCTGGCG CGGCTGGGCC CGCGCGGCGC CTGCCTGGCG
GCGCTCGTGG TGTTCGGCGC GGGGTCGACG GCCTGCGCGC TCGCACCGGC CATGCCCTGG
CTGCTCGCGG GCCGCACGGT GCAGGGGCTG GGCGGCGGCC TGCTCGCGGC CTTGAGCTAT
GCGCTGATCC AGCGGGTGTT CGCGCCGCGG CTGTGGCCGC GCGCGGTGGC GCTGGTGTCG
GGCATGTGGG GCGTGGCCAC GCTCTGCGGG CCCGCGGTGG GCGGCCTGTT CGCGCAGGCG
GGGCACTGGC GCTGGGCCTT CTGGTCGCTG CTGCCGCTGG CTGCCGTGCA GGCGCTGCTG
GTCGCGGTGC AGTTGCGGCC CGCGGCCGGC GTGCGGCATG AACGGCCATC GGCCATGCCG
CGCATTGCGG CGCTGCAGAT CGGCTTGCTG GTGGCCTCGG TGCTGGTGAT CGCGGCCAGC
GAGTTCCTGT CGGCCATGGC CTGGCAGGCC GCCGGCGTGG CGCTGGGCCT GGCGCTCGGC
GTGGCCGCCA CGCGCATTGA CCGGCATGCC GCGGTGCGGC TGCTGCCCGC CGGCGCCTAC
GCGCTGCGCA CGCCGATGGG CGCCATCTAT GCCTGCGTGG TGCTGCTCTT GATCGGCACC
ACCACCGAGA TCTTCGTGCC GTACTTCCTG CAGTTGCTGC ATGGCCATTC GCCGCTGTCG
GCCGGCTATC TCACTGCGGC GATGGCCGGT GGCTGGAGCG CGGGCTCGCT GCTGTCGTCG
GGGCGCAGCG GCGCGGGCGC CGACCGCATG CTGCGCGCCG GGCCGGTGGC CTGCACGCTG
GGGCTTGCCG CGCTCGCGCT GCTGCTGCCG GCACCCGGGC GCTTTGCGCC GGGGCTCGAG
ATGCTGCTGG CCGCCATTGC GCTGGCGGCC CTGGGGCTGG GCGTGGGCAT CGGATGGCCG
CACCTGGTCA CGCGCGTGAT GTCGCTCGCG CCGGCCGAGC AGGAAGGCCT GGCCTCGGCC
TCGATCACCA CCGTGCAGCT CTACGGCATG GCCGTGGGCG CGGCGGTGGC GGGGCTGGTG
GCCAACGCGG CCGGCCTCAG CGAGCCCGGC GGCGCGGCGG GCGCGCGCTC CGCCGCGGCC
TGGCTGTTTG CGAGCTTCGC AATCGCGCCC GCGCTGGCGG CGTGGCTGGT GGCGCGCTTC
GTTGCCGCGC GCGGCCGATA A
|
|---|
| Protein sequence | MPAASSNAPA SLHPASPAAD WSELFSGRNG WRALALTGGV ALHAVNVHIV TTVLPSVVNE
IGGLDWYAWS TTLFVVGSIL GATLSVRLLA RLGPRGACLA ALVVFGAGST ACALAPAMPW
LLAGRTVQGL GGGLLAALSY ALIQRVFAPR LWPRAVALVS GMWGVATLCG PAVGGLFAQA
GHWRWAFWSL LPLAAVQALL VAVQLRPAAG VRHERPSAMP RIAALQIGLL VASVLVIAAS
EFLSAMAWQA AGVALGLALG VAATRIDRHA AVRLLPAGAY ALRTPMGAIY ACVVLLLIGT
TTEIFVPYFL QLLHGHSPLS AGYLTAAMAG GWSAGSLLSS GRSGAGADRM LRAGPVACTL
GLAALALLLP APGRFAPGLE MLLAAIALAA LGLGVGIGWP HLVTRVMSLA PAEQEGLASA
SITTVQLYGM AVGAAVAGLV ANAAGLSEPG GAAGARSAAA WLFASFAIAP ALAAWLVARF
VAARGR
|
|---|
| |