Gene Vapar_0483 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagVapar_0483 
Symbol 
ID7970224 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameVariovorax paradoxus S110 
KingdomBacteria 
Replicon accessionNC_012791 
Strand
Start bp524011 
End bp524565 
Gene Length555 bp 
Protein Length184 aa 
Translation table11 
GC content72% 
IMG OID644791086 
ProductCinA domain protein 
Protein accessionYP_002942412 
Protein GI239813502 
COG category[R] General function prediction only 
COG ID[COG1546] Uncharacterized protein (competence- and mitomycin-induced) 
TIGRFAM ID[TIGR00199] competence/damage-inducible protein CinA C-terminal domain 


Plasmid Coverage information

Num covering plasmid clones19 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGGTGAACA CGATGGAAGC CTCGACCCCA GCGAATTTTC TTGCCGACCA GGACACGCCC 
GCGCTCGTCG CGGCCTTGGC CGAACTGCTG CTGAAGAAGG GCTGGATGCT GGCCACGGCC
GAAAGCTGCA CCGGCGGGCT CATTGCCGGC GCATGCACCG AGCTCGCGGG CTCCAGCGCC
TGGTTCGAGC GCGGCTTCGT CAGCTACTCG AACGCGGCCA AGACCGAACT GCTGGGCGTC
GACGCCGCGC TGATCGAAGC CCACGGCGCG GTCAGCGAGC CGGTGGCGCG CGCCATGGCC
GAAGGCGCCA TCGCGCATTC GGCAGCGCGT GCCGCGGTGG CCGTGACCGG CGTGGCCGGC
CCTACCGGCG GCAGCCCCGA CAAGCCGGTC GGCACCGTGT GGTTCGGCTG GTCGGCCGGC
GGGCAGGTGC GCACCGAGCG CCGCCGCTTC GACGGGGACC GCGCCGCGGT GCGCGCCGCC
ACGGTGCACT ACGCCCTGCA GACACTGGTG GGCCTGCTCG GCCCGCAGCC CGGCACAACA
ACGAAGGCCC CATGA
 
Protein sequence
MVNTMEASTP ANFLADQDTP ALVAALAELL LKKGWMLATA ESCTGGLIAG ACTELAGSSA 
WFERGFVSYS NAAKTELLGV DAALIEAHGA VSEPVARAMA EGAIAHSAAR AAVAVTGVAG
PTGGSPDKPV GTVWFGWSAG GQVRTERRRF DGDRAAVRAA TVHYALQTLV GLLGPQPGTT
TKAP