| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Vapar_0479 |
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| Symbol | |
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| ID | 7970220 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Variovorax paradoxus S110 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_012791 |
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| Strand | + |
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| Start bp | 521195 |
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| End bp | 521977 |
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| Gene Length | 783 bp |
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| Protein Length | 260 aa |
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| Translation table | 11 |
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| GC content | 69% |
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| IMG OID | 644791082 |
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| Product | SEC-C motif domain protein |
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| Protein accession | YP_002942408 |
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| Protein GI | 239813498 |
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| COG category | [R] General function prediction only |
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| COG ID | [COG3318] Predicted metal-binding protein related to the C-terminal domain of SecA |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 16 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGACCAACA ACCACGACGC CCCCCAGCCC GAAGCGGCCG CTTCCGCCCC CCTCGGCCCC
GACGATTTCG ACGCCCTCGA CCAGGCACTG GACGCCATGC GCGAGCAGGA CGAGGAAATT
CCCCAGTGGG AGTTCTGCGA AGGCTTCATG GCCGCGCTGA TCTGCACCCG CCGGCGCATC
GAGCCGGCCG AATACTGGCC GGTGCTGCTG GGCGAGGGCT TCGTGCCGGC CCAGCACATG
GAGTTCGTCT GGAACTGGAA GCGCCGCTGG CTCGAGATCG AAGAGGGCCT GGACGCCGAC
GTGCAGTCGC TCGACGACGA GCGCAGCTGG CAGCCCGAGG TGCTCGACAC CCGCGGCGCC
ATCGCCTCGC TGCCCGAGGA AGAGCGCGCC GAGGTGGCGG GCGAGGAAAT TCCCTCGTTC
GCGCAGGTCT GGGCGCTGGG CTTCATGTAC GCGGTCGAGA ACTGGCCCGA GGACTGGGCC
GCGCCGCGCG ACAAGGAAGC CGCCCAGATG CTGGACGACG CGCTCGACAA CATCGTGGCG
CTGACCGAGG ACGACAAGGC CAAGCCCACG CTCTCGATGT TCAGCGACGA CGGCCCGCCG
AGCGTGAGCC AGCAGCGGCT GGACGATTTC GGCGCCGCCA TCTGGGCCGT GTACGACCTG
CGCCAGCTCT GGAAGAGCCT GGGCCCGAAG GTCGAGACCG TGCGCAAGGA AGCCACGCCC
GGCCGCAACG ACCCCTGCCC CTGCGGCAGT GGCAAGAAAT ACAAGAAGTG CCACGGTGCC
TGA
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| Protein sequence | MTNNHDAPQP EAAASAPLGP DDFDALDQAL DAMREQDEEI PQWEFCEGFM AALICTRRRI
EPAEYWPVLL GEGFVPAQHM EFVWNWKRRW LEIEEGLDAD VQSLDDERSW QPEVLDTRGA
IASLPEEERA EVAGEEIPSF AQVWALGFMY AVENWPEDWA APRDKEAAQM LDDALDNIVA
LTEDDKAKPT LSMFSDDGPP SVSQQRLDDF GAAIWAVYDL RQLWKSLGPK VETVRKEATP
GRNDPCPCGS GKKYKKCHGA
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