Gene Vapar_0469 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagVapar_0469 
Symbol 
ID7970210 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameVariovorax paradoxus S110 
KingdomBacteria 
Replicon accessionNC_012791 
Strand- 
Start bp512172 
End bp512807 
Gene Length636 bp 
Protein Length211 aa 
Translation table11 
GC content66% 
IMG OID644791072 
ProductYceI family protein 
Protein accessionYP_002942398 
Protein GI239813488 
COG category[S] Function unknown 
COG ID[COG2353] Uncharacterized conserved protein 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones13 
Plasmid unclonability p-value0.730302 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGAAGAAGC TCCTCCTCGC TGCCGCGCTC TCAGCCGCGG CGGCCCTTGC CACCCCTGCC 
CTGGCACAGG AATACACCGC GCCGCCCGTC GCCGCCAAGC CCGCGGGCGG CCCGGTGAAG 
AACGCCAGCT ACGTGATCGA CCCCACCCAC ACCTTCGTGA TGTACGAGAT GGGGCACTAC 
GGCACCACCA CCAACCGCGG CCGCTTCAGC ACCAAGGACG GCTCGGTGCA GATCGACGGC 
AGCGGCAGCA GCGGCAAGGT CGACATCACG ATGGACATCA GCTCCATCAA CACCGGCGTC 
GACCTGCTCA ACCGCCACGT GCAAAGCAAG GACTTCTTCA ACGTGGCCGA ATTCCCGACC 
GGGCGCTTCG TGGCGGACCG CATCGAGTTC AACGGCGACA AGGTGGCCGA CGTGCCGGGC 
ACGCTCACGC TGATGGGGCA GACCAGGCCC GTCACGCTCA GGGCCGTGCG CTTCAACTGC 
TACCTGAACC CGCTCATCAA CCGCCAGGTC TGCGGCGGCG ACTTCGAGAC GACGGTGCAG 
CGCAGCGACT GGGGCATCAC CTGGGGCCTG AACTTCGGCT TCGAGAACAA GGTGAAGCTG 
CTGGTGCAGG TCGAAGCGGT CAACGTGCAG CAATAG
 
Protein sequence
MKKLLLAAAL SAAAALATPA LAQEYTAPPV AAKPAGGPVK NASYVIDPTH TFVMYEMGHY 
GTTTNRGRFS TKDGSVQIDG SGSSGKVDIT MDISSINTGV DLLNRHVQSK DFFNVAEFPT 
GRFVADRIEF NGDKVADVPG TLTLMGQTRP VTLRAVRFNC YLNPLINRQV CGGDFETTVQ 
RSDWGITWGL NFGFENKVKL LVQVEAVNVQ Q