| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Vapar_0464 |
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| Symbol | |
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| ID | 7970205 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Variovorax paradoxus S110 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_012791 |
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| Strand | + |
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| Start bp | 506760 |
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| End bp | 507479 |
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| Gene Length | 720 bp |
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| Protein Length | 239 aa |
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| Translation table | 11 |
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| GC content | 70% |
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| IMG OID | 644791067 |
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| Product | lipopolysaccharide transport periplasmic protein LptA |
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| Protein accession | YP_002942393 |
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| Protein GI | 239813483 |
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| COG category | [S] Function unknown |
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| COG ID | [COG1934] Uncharacterized protein conserved in bacteria |
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| TIGRFAM ID | [TIGR03002] lipopolysaccharide transport periplasmic protein LptA |
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Plasmid Coverage information |
| Num covering plasmid clones | 9 |
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| Plasmid unclonability p-value | 0.150432 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGACATTGC CCTCCTATCC CCACACCACC CCCTTCGTTC GCCGAATCCG CCGCCTGGCC
GCCGGCGCGC TGCTGCTGGC CGGCCTGGCC TCGGGCGCGC TGGCCGAGAC CGCCGACCGC
AGCAAGCCGA TGAACATCGA ATCCGATGCG ATGCGCTACG ACGACCTCAA GCAGACGAGC
GTGTTCACGG GCAACGTGCT GGTCACCAAG GGCACGATCA TCATCCGCGG CGCGCGCATC
GACGTGCGCC AGGACGCCGA GGGCTACCAG TACGGCGTGG TCACGGCGGC GCCCGGCAAA
AGGGCCTACT ACAAGCAGAA GCGCAATGCG CCCGACGAGT GGATCGAGGG CGAATCCGAG
GTCATCGAAT ACGACAGCCG CGCCGACAAC GTCAAGTTCA TCCGCAATGC CGTCATGCGC
CGGCTGATCG GCGCCACGCC CAACGACGAG AGCACCGGCG CGCTCATCGT CTACGACCAG
AGCAACGACA CCTACACGGT CAACGGTTCC ACCGTGCCGC CCAACACGGG CGTGAACGCA
CCGCCAGTCG GACGCGTGCG GACCATCCTC ACGCCCAAGA GCGCCACCGC GCCGGCGCCC
GGGGCCTCGG CGCCCGCCGC CGGACGGGCC GCGCCGGCGG CGGCCGCGCC CCAGCCGGCA
CCCGGTGCCG GCCTGCGCTC GAGCACCACG CTGGGCGGCG ACGGGGAAAG GCGCAAGTGA
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| Protein sequence | MTLPSYPHTT PFVRRIRRLA AGALLLAGLA SGALAETADR SKPMNIESDA MRYDDLKQTS
VFTGNVLVTK GTIIIRGARI DVRQDAEGYQ YGVVTAAPGK RAYYKQKRNA PDEWIEGESE
VIEYDSRADN VKFIRNAVMR RLIGATPNDE STGALIVYDQ SNDTYTVNGS TVPPNTGVNA
PPVGRVRTIL TPKSATAPAP GASAPAAGRA APAAAAPQPA PGAGLRSSTT LGGDGERRK
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