| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Vapar_0434 |
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| Symbol | |
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| ID | 7970175 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Variovorax paradoxus S110 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_012791 |
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| Strand | - |
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| Start bp | 474088 |
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| End bp | 476349 |
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| Gene Length | 2262 bp |
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| Protein Length | 753 aa |
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| Translation table | 11 |
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| GC content | 70% |
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| IMG OID | 644791037 |
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| Product | TonB-dependent siderophore receptor |
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| Protein accession | YP_002942363 |
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| Protein GI | 239813453 |
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| COG category | [P] Inorganic ion transport and metabolism |
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| COG ID | [COG1629] Outer membrane receptor proteins, mostly Fe transport |
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| TIGRFAM ID | [TIGR01783] TonB-dependent siderophore receptor |
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Plasmid Coverage information |
| Num covering plasmid clones | 12 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGTCCGCTG CTCCGTTTCC CCGGCTTCGC CCGACCGTGG CCGCCTCGCT GCTCGCCCTG
CACGCCGTGG CCGCCCTTGC ACAGACCACC GCGGCGCAGC CAGCCGCCTC GCCCTCGCCG
TCTTCATCGA ACGGCACGCT GGCCACCGTC ACCGTCGAAG CCAGCGCCGA CGCCTCGGCC
GAGGGCCTGA CCAAGCCCTA CGCCGGCGGC CAGGTGGCGC GCGGCGGGCG CGTCGGCATC
CTGGGCAACC AGGACATGAT GAGCACGCCG TTCTCCGGCA CCAGCTACAC CCACGAGCTG
ATCCAGAACC AGCAGGCCCG GAGCGTGGCC GACGTGCTGC AGAACGACCC GACGGTGCGC
GTGGCGCGCG GCTTCGGCAA CTTCCAGGAG TCGTACTTCA TCCGCGGCTT CATCGTCAAC
TCGGACGACA TCGCCTACAA CGGGCTCTAC GGCCTGCTGC CGCGGCAGTA CATCTCGTCC
GAACTGTTCG AGCGCGTGGA AGTGTTCCGC GGTGCCAGCG CATTCCTGAA CGGCGCCACG
CCCTCGGGCG GCGGCATCGG CGGCAACATC AACCTGCTGC CCAAGCGCGC GCCGAACGAG
CCGCTCACGC AGGTCACGCT GGGCACGGCC AGCGGCTCGC AGGCCTATGC CGCAACCGAC
ATCGCGCGCC GCTTCGGCCC CGACCAGAGC GTGGGCGTGC GCCTGAACGC CGCGCACCGC
GACGGCGGCA CGGGCGTGGA CGGCGAAGGC GTCAAGCTCG ACGTGCTCTC GGTGGGCCTG
GACTGGCGCA GCCGCGATGC GCGCATCTCG GCCGACATCG GCCACCAGGA GCACCGCCTG
CGCAACACGC GGCCCAACGT GACGCTCGGC AGCGGCGTCA CGTTGGTGCC CAGGGCGCCC
GACAACAGCA CGAACTTCGC GCAGCCCTGG ACCTATTCCT ACGAGCGCGA CACCTTCGGC
TCGGTGCGCG GCGAGTACGA CATCACGCCG GACATCACGG CCTGGGCCGC CGCCGGCGCG
CGCAGCAGCT ACGAGAACAA TTCCCTCGCG GGCCCGACGG TCTCCAACGG CCTCACGGGC
GCGGCCACGA TGACCCGCTT CGACAACACG CGCGAGGACA AGGTCAAGAC GGCCGAGATC
GGCGTGCGCG GCAAGCTGCG CACCGGCAGC GTGGGCCATG AATGGGTGCT CGGCTATTCC
TACTTCGACC TCGAGAAGAA GAACGCCTAC GGCATGGGCC TGGGCGCCGG CGGCACGCTC
AACACCGGCA TCTACTCTCC GCGCAGCTAT TTCCCGCCGG CGCTGACCTA CCTGGGCAAC
GACCTCGCCA ACCCCGCGCT CAACGGCACC ACCACGCTCA AGAGCCTGGC CATCGGCGAC
ACGCTGTCCT TCATGGACGA CCGCCTGCGC CTGACGCTGG GCGCGCGCCG CCAGACGATC
GAGACCGCCG ACATCGGCTA CCGCATCGTG AGCAACGGCC AGCAGACCGC CGCCGGCGGC
ACCGTCACCT CGTACGACCA GAGCCGCACC AGCCCGCTGG CGGGCATCGT GTTCAAGGCC
AACGACCGGC TGTCGGTCTA TGCGAACTAC ATCGAAGGAC TGGCGCAGGG CGAAACCGCG
CCCGCCCAGT CCGGCGGCCA GCCGGTGCTC AATGCCGGCC AGCAGCTGCG CCCCTACGTC
TCCAAGCAGA AGGAGGTCGG CATCAAGTAC GACGCCGGCC AGGTCGGCGG CACGCTCGCC
TTCTTCTCCA CCGAGAAGCC GCGCGCCTTC GTGCAGGGCA ACTACTTCTC CGCGAACGGC
AAGGACCGCC ACCAGGGCGC CGAGCTCAGC GTCTTCGGCC AGGTCAGCAA GGGCCTGCGG
CTGCTGGGCG GCGTGACCTG GCTGGACGCC AAGCAGAAGG ACACGGGCAG CAGCACCACC
GACGGCAAGC GCGTGATCGG CGTGCCCAAG GCGCAGGGCA GCATCGGCGT CGAATGGGAT
GTGCCGGGCG TGCAGGGCCT CTCGCTCGAC GGCCGCGTGG TGGCGAGCGG ATCGAGCTAC
GCCAATGCCG CCAACACGCT GCGCGTGCCG GGCTGGACCC GCGTGGACAT CGGCGCGCGC
TACGTGACCG AAGTGAGCGG CAAGCTGCTC ACCCTGCGCG CGCGCATCGA GAACCTGGCC
GACCGCAACT ACTGGTCCTC GGTCGGCGGC TATCCCGGCT CCGGCTACCT GGTGCTCGGC
GCGCCGCGCA CGTTCAACCT CTCGGCCACG CTCGAGTTCT GA
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| Protein sequence | MSAAPFPRLR PTVAASLLAL HAVAALAQTT AAQPAASPSP SSSNGTLATV TVEASADASA
EGLTKPYAGG QVARGGRVGI LGNQDMMSTP FSGTSYTHEL IQNQQARSVA DVLQNDPTVR
VARGFGNFQE SYFIRGFIVN SDDIAYNGLY GLLPRQYISS ELFERVEVFR GASAFLNGAT
PSGGGIGGNI NLLPKRAPNE PLTQVTLGTA SGSQAYAATD IARRFGPDQS VGVRLNAAHR
DGGTGVDGEG VKLDVLSVGL DWRSRDARIS ADIGHQEHRL RNTRPNVTLG SGVTLVPRAP
DNSTNFAQPW TYSYERDTFG SVRGEYDITP DITAWAAAGA RSSYENNSLA GPTVSNGLTG
AATMTRFDNT REDKVKTAEI GVRGKLRTGS VGHEWVLGYS YFDLEKKNAY GMGLGAGGTL
NTGIYSPRSY FPPALTYLGN DLANPALNGT TTLKSLAIGD TLSFMDDRLR LTLGARRQTI
ETADIGYRIV SNGQQTAAGG TVTSYDQSRT SPLAGIVFKA NDRLSVYANY IEGLAQGETA
PAQSGGQPVL NAGQQLRPYV SKQKEVGIKY DAGQVGGTLA FFSTEKPRAF VQGNYFSANG
KDRHQGAELS VFGQVSKGLR LLGGVTWLDA KQKDTGSSTT DGKRVIGVPK AQGSIGVEWD
VPGVQGLSLD GRVVASGSSY ANAANTLRVP GWTRVDIGAR YVTEVSGKLL TLRARIENLA
DRNYWSSVGG YPGSGYLVLG APRTFNLSAT LEF
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