| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Vapar_0419 |
|---|
| Symbol | |
|---|
| ID | 7970160 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Variovorax paradoxus S110 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_012791 |
|---|
| Strand | + |
|---|
| Start bp | 456160 |
|---|
| End bp | 456774 |
|---|
| Gene Length | 615 bp |
|---|
| Protein Length | 204 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 68% |
|---|
| IMG OID | 644791022 |
|---|
| Product | uncharacterized peroxidase-related enzyme |
|---|
| Protein accession | YP_002942348 |
|---|
| Protein GI | 239813438 |
|---|
| COG category | [S] Function unknown |
|---|
| COG ID | [COG2128] Uncharacterized conserved protein |
|---|
| TIGRFAM ID | [TIGR00778] alkylhydroperoxidase AhpD family core domain
[TIGR01926] uncharacterized peroxidase-related enzyme |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 19 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGAGCACGA GCAATACGAA CACGCCGATC CGCATCAAGG GCTTCACCAA CGAGGTGCTG
AGCTGGAAGC CCTGGCTCGA CCCGGTCGAC GTTGCCTCGG CCACGCCGGC CCAGCTGGCC
GCGCTCGACG AGATGAGCCC GCAGGCCCGC ACCTCGCCGT ACTTCCTGCT GCTCGCGCAC
CAGCCCGAGA TGCTGCTGCA GCGCTCCATC GCCTTCAACG CGATCATGTT CGCACCGGGC
GGCATGCCGC GCGCGGAGCG CGAGCTGGGC GCCACGGTGG AGTCGCGCGT CAACGGCTGC
GTGTACTGCG CCTCGGTGCA TGCGCAGCGC TTCGAGCAGC TCGCCAAGCG CAGCGACGTG
ATCTCGCAGG TGTTCGAGGA GCCGGCTTCC GCGGGCACCA CGCCGCGCGA GAAGGCCATC
GTCGAATTCT CGATCCAGCT CGGCGCCGAG CCCGGCAAGG TGTCGGCCGA CAATGTGCGA
ACGCTCAAGG CGGTGGGGCT CGCCGAGCTC GAGATCCTCG ACCTGGTCCA TTCCGTGGCG
CTCTTCGCCT GGGCCAACCG GCTGATGCTC AACCTGGGCG AGCCGGTCTT TCCGCCGGTA
ACGGCAGCGT CATAG
|
|---|
| Protein sequence | MSTSNTNTPI RIKGFTNEVL SWKPWLDPVD VASATPAQLA ALDEMSPQAR TSPYFLLLAH
QPEMLLQRSI AFNAIMFAPG GMPRAERELG ATVESRVNGC VYCASVHAQR FEQLAKRSDV
ISQVFEEPAS AGTTPREKAI VEFSIQLGAE PGKVSADNVR TLKAVGLAEL EILDLVHSVA
LFAWANRLML NLGEPVFPPV TAAS
|
|---|
| |