| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Vapar_0405 |
|---|
| Symbol | |
|---|
| ID | 7973549 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Variovorax paradoxus S110 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_012791 |
|---|
| Strand | + |
|---|
| Start bp | 438292 |
|---|
| End bp | 439251 |
|---|
| Gene Length | 960 bp |
|---|
| Protein Length | 319 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 67% |
|---|
| IMG OID | 644791008 |
|---|
| Product | HPr kinase/phosphorylase |
|---|
| Protein accession | YP_002942334 |
|---|
| Protein GI | 239813424 |
|---|
| COG category | [T] Signal transduction mechanisms |
|---|
| COG ID | [COG1493] Serine kinase of the HPr protein, regulates carbohydrate metabolism |
|---|
| TIGRFAM ID | [TIGR00679] Hpr(Ser) kinase/phosphatase |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 15 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGAAGCCGA CCGTCATCAG TGCCGACGCC ATGTTCGAGG AATTCCGCGG GTCGCTCCGC
TGGGAATGGC TCGCCGGGCT CGGGGCGTCA GAGCGCCAGT TCGACCCTGA AGTCATCAGC
CGGGCCCAAT CGGCGGCCGA TCTGGTCGGT TACCTCAATT ACATCCATCC GTACCGCGTG
CAGATCCTGG GCGCGCGCGA AGTGGCCTAC CTGACGCGCG GCAGCCAGGA AGACTGCGCC
CGGCGCATCG CCCGCATCGT CACGCTGGAG CCGCCCATGC TGGTGCTGGC CGACGGCCAG
GCCGCGCCGG ACGAGCTGCT ATCGATTTGC GAGCGCGCCC AGCTGCCGCT GTTCGCCACG
CGCGAGTCGT CGGCCTTCGT GATCGACCTG CTGCGGGCCT ACCTGTCCAA GCATTTCGCG
GAGCGCACCT CGATGCACGG GGTGTTCATG GACATCCTGG GCATGGGGGT CATGATCACC
GGCGAATCGG GGCTCGGAAA GAGCGAGCTC GGGCTGGAGT TGATCTCGCG CGGCAACGGC
CTGGTGGCCG ACGACGCGGT CGACCTGTTC CGCATCAACC AGAACACCAT CGAGGGCCGC
TGCCCCGACC TGCTGCTGAA CCTGCTGGAG GTGCGCGGCA TCGGCCTTCT GGACATCCGC
GCGATCTTCG GCGAGACGGC GGTGCGGCGA AAGATGCGGC TCAAGCTGAT CGTGCACCTG
GTGCGGCGCG ACAGCTTCGA GCGCGACTAC GAGCGCATGC CCTCGGCGCC GCTCACGCAG
GACGTGCTGG GCATTCCGGT GCGCAAGGTC ATCATCCAGG TGGTGGCCGG GCGCAACATC
GCCGTGCTGG TGGAAGCCGC CGTGCGCAAC TCGATCCTGC AGCTGCGCGG CATCGACACC
TATGCGGATT TCGTGGCGCG CCACCACAAG GCGATGGAAA GCGGGCGCGA CGGGGACTGA
|
|---|
| Protein sequence | MKPTVISADA MFEEFRGSLR WEWLAGLGAS ERQFDPEVIS RAQSAADLVG YLNYIHPYRV
QILGAREVAY LTRGSQEDCA RRIARIVTLE PPMLVLADGQ AAPDELLSIC ERAQLPLFAT
RESSAFVIDL LRAYLSKHFA ERTSMHGVFM DILGMGVMIT GESGLGKSEL GLELISRGNG
LVADDAVDLF RINQNTIEGR CPDLLLNLLE VRGIGLLDIR AIFGETAVRR KMRLKLIVHL
VRRDSFERDY ERMPSAPLTQ DVLGIPVRKV IIQVVAGRNI AVLVEAAVRN SILQLRGIDT
YADFVARHHK AMESGRDGD
|
|---|
| |