Gene Vapar_0403 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagVapar_0403 
Symbol 
ID7973547 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameVariovorax paradoxus S110 
KingdomBacteria 
Replicon accessionNC_012791 
Strand
Start bp437216 
End bp437545 
Gene Length330 bp 
Protein Length109 aa 
Translation table11 
GC content60% 
IMG OID644791006 
Productsigma 54 modulation protein/ribosomal protein S30EA 
Protein accessionYP_002942332 
Protein GI239813422 
COG category[J] Translation, ribosomal structure and biogenesis 
COG ID[COG1544] Ribosome-associated protein Y (PSrp-1) 
TIGRFAM ID[TIGR00741] ribosomal subunit interface protein 


Plasmid Coverage information

Num covering plasmid clones17 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGAATTTGA CGATCAGCGG TCATCACCTC GACGTCACAC CTGCCTTGCG CACCTACGTC 
ACGAGCAAGC TGGACCGGAT CACACGGCAC TTCGACCAGG TGGTCGATGT GAAGGTGCTC
CTCACGGTGG AAAAGCAGAA GGAAAAGGAA CGCCGCCAAA GGGCGGAGTG CAACATTCAC
GTCAAGGGTA ACGACATGTT CGCGGAGTCG AGCCACGCTG ATCTCTATGC TGCGGTCGAT
GAACTGGTCG ACAAGCTCGA CCGCCAGGTG GTGCGCCACA AGGACCGCCT GCAGGACCAC
CACCACGCCG CCCCCAAGCG CGTGATGTAG
 
Protein sequence
MNLTISGHHL DVTPALRTYV TSKLDRITRH FDQVVDVKVL LTVEKQKEKE RRQRAECNIH 
VKGNDMFAES SHADLYAAVD ELVDKLDRQV VRHKDRLQDH HHAAPKRVM