Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Vapar_0403 |
Symbol | |
ID | 7973547 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Variovorax paradoxus S110 |
Kingdom | Bacteria |
Replicon accession | NC_012791 |
Strand | + |
Start bp | 437216 |
End bp | 437545 |
Gene Length | 330 bp |
Protein Length | 109 aa |
Translation table | 11 |
GC content | 60% |
IMG OID | 644791006 |
Product | sigma 54 modulation protein/ribosomal protein S30EA |
Protein accession | YP_002942332 |
Protein GI | 239813422 |
COG category | [J] Translation, ribosomal structure and biogenesis |
COG ID | [COG1544] Ribosome-associated protein Y (PSrp-1) |
TIGRFAM ID | [TIGR00741] ribosomal subunit interface protein |
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Plasmid Coverage information |
Num covering plasmid clones | 17 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGAATTTGA CGATCAGCGG TCATCACCTC GACGTCACAC CTGCCTTGCG CACCTACGTC ACGAGCAAGC TGGACCGGAT CACACGGCAC TTCGACCAGG TGGTCGATGT GAAGGTGCTC CTCACGGTGG AAAAGCAGAA GGAAAAGGAA CGCCGCCAAA GGGCGGAGTG CAACATTCAC GTCAAGGGTA ACGACATGTT CGCGGAGTCG AGCCACGCTG ATCTCTATGC TGCGGTCGAT GAACTGGTCG ACAAGCTCGA CCGCCAGGTG GTGCGCCACA AGGACCGCCT GCAGGACCAC CACCACGCCG CCCCCAAGCG CGTGATGTAG
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Protein sequence | MNLTISGHHL DVTPALRTYV TSKLDRITRH FDQVVDVKVL LTVEKQKEKE RRQRAECNIH VKGNDMFAES SHADLYAAVD ELVDKLDRQV VRHKDRLQDH HHAAPKRVM
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