| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Vapar_0401 |
|---|
| Symbol | |
|---|
| ID | 7973545 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Variovorax paradoxus S110 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_012791 |
|---|
| Strand | - |
|---|
| Start bp | 433562 |
|---|
| End bp | 434548 |
|---|
| Gene Length | 987 bp |
|---|
| Protein Length | 328 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 63% |
|---|
| IMG OID | 644791004 |
|---|
| Product | magnesium and cobalt transport protein CorA |
|---|
| Protein accession | YP_002942330 |
|---|
| Protein GI | 239813420 |
|---|
| COG category | [P] Inorganic ion transport and metabolism |
|---|
| COG ID | [COG0598] Mg2+ and Co2+ transporters |
|---|
| TIGRFAM ID | [TIGR00383] magnesium Mg(2+) and cobalt Co(2+) transport protein (corA) |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 16 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGCTCAATA TCTTTACGCT TGCCAACGGC CGCCTTGTCC AGGAAGAGAT CGAGGCGCTC
GAGGAGCTGT CCAAGTTCCA GCCGATCTGG GTCGACCTCG AATCGCCCAC GCTCGAGGAA
AAGCGCTGGA TCAAGCAGTA CTACGGCCTC TCGATTCCCG AAGACGCGAT GGACGAGGAC
ATCGAGGAGT CGGCCCGCTT CTACGAGGAA GACAACGGCG AGCTGCACAT CCGCTCCGAC
TTCCTGATCG ACGACGACGA AGACCCGCGC TCGGTGCGCG TGGCCTTCAT CCTGAACCAG
CACAACACCG AGCTTCGCAG CCGCGGCGTG CTGTTCTCGA TCCACGACGA GGACGTGCCG
GTGTTCCGGC TGCTGCGCAT GCGTGCGCGC CGCGCGCCGG GCCTCATCGA AGACGCCAAG
GAAGTGCTGC TCAAGCTGTT CGACGCCGAC GCGGAATACT CGGCCGACAC GCTCGAGAAC
ATCTACGACG AACTCGAGAT CGCGGGCAAG AAGGTGCTCG AAGGCAACGT GAGCGACGAG
CTGGCCGGCG AGGTGCTGGG CGCCATCGCG CGCCAGGAAG ACTTGAACGG CCGCATCCGC
CGCAACGTGA TGGACACGCG CCGCGCCGTG AGCTTCATGA TGCGCAGCCG CATGCTCAAC
GCCGAGCAGT TCGAGGAGGC GCGGCAGATC CTGCGTGACA TCGAATCGCT GGACAACCAC
ACGGCCTTCC TGTTCGACAA GATCAACTTC CTGATGGATG CGACCGTCGG TTTCATCAAC
ATCAACCAGA ACAAGACCAT CAAGATCTTC TCGGTGGCCA GCGTGGCGCT GCTGCCGCCC
ACGCTGATCG CGAGCATCTA CGGCATGAAC TTCAAGCTGA TGCCCGAGCT CGACTGGTCG
CTCGGCTATC CGTATGCGCT GGCGCTGATG GCGGCAAGCG CGCTGGTGCC GATGTGGTAC
TTCCGCCGGC GCGGCTGGCT CAAGTAG
|
|---|
| Protein sequence | MLNIFTLANG RLVQEEIEAL EELSKFQPIW VDLESPTLEE KRWIKQYYGL SIPEDAMDED
IEESARFYEE DNGELHIRSD FLIDDDEDPR SVRVAFILNQ HNTELRSRGV LFSIHDEDVP
VFRLLRMRAR RAPGLIEDAK EVLLKLFDAD AEYSADTLEN IYDELEIAGK KVLEGNVSDE
LAGEVLGAIA RQEDLNGRIR RNVMDTRRAV SFMMRSRMLN AEQFEEARQI LRDIESLDNH
TAFLFDKINF LMDATVGFIN INQNKTIKIF SVASVALLPP TLIASIYGMN FKLMPELDWS
LGYPYALALM AASALVPMWY FRRRGWLK
|
|---|
| |