| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Vapar_0399 |
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| Symbol | |
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| ID | 7973543 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Variovorax paradoxus S110 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_012791 |
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| Strand | + |
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| Start bp | 431143 |
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| End bp | 432783 |
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| Gene Length | 1641 bp |
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| Protein Length | 546 aa |
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| Translation table | 11 |
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| GC content | 63% |
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| IMG OID | 644791002 |
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| Product | extracellular solute-binding protein family 5 |
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| Protein accession | YP_002942328 |
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| Protein GI | 239813418 |
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| COG category | [E] Amino acid transport and metabolism |
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| COG ID | [COG0747] ABC-type dipeptide transport system, periplasmic component |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 17 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGAAGAAGA CCACCCAGCC ATCCGTTTCG CGCCGCTCGC CCAGGCTTGG CGCGCTGCTC
GCGCCGGCGG CACTCGCCAT GCTCGCACTG GGCGCGGGCG CCGTGTCCGC CAAGACGCTG
GTCTATTGCT CGGAGGGCAG TCCCGAGAAC TTCTATCCGG GCGTCAACAC CACCGGCACC
TCGTTCGACG TGACCACGCA GGTCTACAAC ACCATTGTCG AGTTCGAGCG CGGCGGCACC
AAGGTCGTGC CGGGCCTGGC TGAAAAATGG GACATCTCCG CCGATGGCAC GGTCTACACC
TTCCACCTGC GCAAGGGCGT CAAGTGGCAC AGCACCAGCA AGAGCTTCAA GCCCACGCGC
GACTTCAACG CCGACGACTT CATCTTCATG CTCGAGCGGC AGTGGAAGGA GAGCGATCCC
TTCTTCAAGG TCACGAGCCA GAACCACTCC TACTTCAACG ACATGGGCAT GCCCAAGCTC
CTGAAGTCGG TGGACCGCAT CGACGACCTG ACCGTGAAGA TCACGCTCAA CCAGGCCGAG
GCGCCGTTCC TTGCCAACCT GGCCATGCAG TACGCGGGCA TCCAGTCGAA GGAATACGCC
ATTGCGATGC TGAAGGCCGG CACGCCCGAG AAGGTCGACC AGGACCCGAT CGGCACCGGC
CCGTTCTACC TCGTGCAATA CCAGAAGGAC GCGGTCATCC GCTTCAAGGC CTTCCCGCAG
TACTGGGGCG GCAAGGCGAA GATCGACGAC CTCGTGTTCG CGATCACGCC CGATGCCTCG
GTGCGCTGGG CCAAGCTGCA GAAGGGCGAA TGCCACGTCA TGCCGTATCC GAATCCGGCC
GATCTCGACG CGATCCGCAA GGACCCGAAC GTGCAGGTGC TCGAGCAGCC TGGCCTCAAC
GTGGGCTACC TTTCGTACAA CACCACCAAG AAGCCCTTCG ACGACGTGCG CGTGCGCAAG
GCCATCAACA TGGCGATCAA CAAGAAGGCG ATCATCGACG GCGTGTACCT GTCGACCGGC
GTGGCCGCGA AGAACCCGAT CCCGCCCACC ATGTGGTCCT ACAACGACGC GGTCAAGGAC
GATCCCTACG ACCCCGAAGC CGCCAAGAAG CTGCTGGCGC AGGCCGGCTT TCCCGATGGC
TTCTCGACCG ACCTGTGGGC CATGCCGGTG CAGCGGCCCT ACAACCCGAA TGCCAAGCGC
ATCGCCGAGC TGATGCAGGC CGACCTTGCC AAGATCAACG TCAAGGCCGA GATCAAGAGC
TTCGAGTGGG GCGAGTACCG CAAGCGCCTG CAGGCCGGCG AGCACCAGAT GGGCATGCTC
GGCTGGACCG GCGACAACGG CGACCCCGAC AACTTCCTCT ACACGCTGCT GGGCTGCGCC
TCGGCCAAGT CGGCCAGCGG CAGCAACATC TCCAAATTCT GCTACCAACC CTACGAAGAC
CTCGTGCTCA AGGCCAAGAG CGCGACCAAG CAGGCCGAGC GCGATGCGCT CTACAAGAAG
GCGCAAGTCA TCTTCAAGGA GCAGGCGCCG TGGTTCACCA TCGCGCACGC GGTGCAGCTG
AAGCCGGTGC GCAAGGAGGT GGTCGACTTC AAGCTCAGCC CCTTCGGCCG CCACACCTTC
TACGGCGTGG ACATCAAGTA G
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| Protein sequence | MKKTTQPSVS RRSPRLGALL APAALAMLAL GAGAVSAKTL VYCSEGSPEN FYPGVNTTGT
SFDVTTQVYN TIVEFERGGT KVVPGLAEKW DISADGTVYT FHLRKGVKWH STSKSFKPTR
DFNADDFIFM LERQWKESDP FFKVTSQNHS YFNDMGMPKL LKSVDRIDDL TVKITLNQAE
APFLANLAMQ YAGIQSKEYA IAMLKAGTPE KVDQDPIGTG PFYLVQYQKD AVIRFKAFPQ
YWGGKAKIDD LVFAITPDAS VRWAKLQKGE CHVMPYPNPA DLDAIRKDPN VQVLEQPGLN
VGYLSYNTTK KPFDDVRVRK AINMAINKKA IIDGVYLSTG VAAKNPIPPT MWSYNDAVKD
DPYDPEAAKK LLAQAGFPDG FSTDLWAMPV QRPYNPNAKR IAELMQADLA KINVKAEIKS
FEWGEYRKRL QAGEHQMGML GWTGDNGDPD NFLYTLLGCA SAKSASGSNI SKFCYQPYED
LVLKAKSATK QAERDALYKK AQVIFKEQAP WFTIAHAVQL KPVRKEVVDF KLSPFGRHTF
YGVDIK
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