Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Vapar_0394 |
Symbol | |
ID | 7973538 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Variovorax paradoxus S110 |
Kingdom | Bacteria |
Replicon accession | NC_012791 |
Strand | + |
Start bp | 425381 |
End bp | 427060 |
Gene Length | 1680 bp |
Protein Length | 559 aa |
Translation table | 11 |
GC content | 66% |
IMG OID | 644790997 |
Product | AMP-dependent synthetase and ligase |
Protein accession | YP_002942323 |
Protein GI | 239813413 |
COG category | [I] Lipid transport and metabolism [Q] Secondary metabolites biosynthesis, transport and catabolism |
COG ID | [COG0318] Acyl-CoA synthetases (AMP-forming)/AMP-acid ligases II |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 12 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGACCGACC GCCCCTGGCT CAGCAGCTAT CCGCAAGGCG TGCCCGCCGA CATCGACGCC TCGCAGTATT CCTCGCTGGT CGGTCTCATG GAGGAGAGCT TTGCCAGGTA CGCCGACCGC ACGGCCTACA GCTTCATGGG CAAGGACGTG AGCTATGCGG AGACCGACAA GCTCAGCAAG GCCTTCGGCG CGTACCTGCA GGGGCTCGGC CTCGCCAAGG GCGACCGCGT CGCGGTCATG ATGCCCAACT GCCCGCAGTA CCCGATCGCG GTCGCGGCCA TCCTGCGCGC CGGCCTGATC CTGGTGAACG TGAATCCGCT GTACACGCCG CGCGAACTCG AGCACCAGCT CAAGGACTCG GGCGCCAAGG CCATCGTCAT CATGGAGAAC TTCGGCACCA CGCTGCAGCA GTGCATCGCG GCCACGCCCA TCAAGCACAT CGTGCTGGCG GCCATGGGCG ACCGGCTCGG CTTCCTCAAG GGGGCGCTCG TCAACTACGT GGTGCGCAAC GTGAAGAAGC TGGTGCCGCA CTACAGCCTG CCGGGCGCGG TGCGCTTCAA CGATGCGCTC GACCAGGGAG CGGGCCGCAC GCTGAAGGCG CCGGCCCTCG GCCCCGACGA CGTGGCCGTC CTGCAGTACA CCGGCGGCAC CACCGGCGTC TCCAAGGGCG CGGTGCTGCT GCACCGCAAC GTCATTGCGA ACGTGCTGCA GTCCGAAGCC TGGAACGAAC CCGTGATGGC CCAGGTGCCG GCGGGCGAGC AGCCCACGAG CGTGTGCGCG CTGCCGCTCT ATCACATCTT CGCCTTCACC GTGGGCATGA TGCTGAACAT GCGCACGGGC GGCAAGCTGA TCCTCATTCC GAATCCGCGC GACCTCGCGG GCGTGCTCAA GGAACTGTCC AAGCACACGA TCCACAGCTT TCCCGCGGTC AACACGCTGT TCAACGGGCT GGCCAACCAC CCCGACTTCA ACACCGTCAA CTGGAAGAAC CTCAAGGTGT CGGTGGGCGG CGGCATGGCC GTGCAGGCGG CGGTCGCGAA GCTCTGGCTC GAGAAGACCG GCTGCCCGAT CTGCGAGGGC TACGGCCTGT CCGAAACCTC GCCCTCGGCC ACCTGCAACC CCACCAACAG CAAGGCCTAC ACCGGCACCA TCGGCCTGCC GCTGCCGAGC ACCTGGCTCA AGCTGCTCGA CGACGAAGGC CGCGAGGTGC CGCCGGGCCA GCCCGGCGAG ATCGCGATCA AGGGCCCGCA GGTGATGGCC GGCTACTGGC AGCGCCCCGA CGAGACCGCC AAGGTCATGA CGCCCGACGG CTACTTCAAG AGCGGCGACA TCGGCGTGGT CGACGAGCGC GGCTACTTCA AGGTGGTCGA CCGCAAGAAG GACATGATCC TGGTCTCGGG CTTCAACGTG TACCCGAACG AGATCGAGGA CGTGGTGGCG CAGATTCCGG GCGTGCTCGA ATGCGCGGCG GTCGGCGTGG CCGACGAGAA GACCGGCGAG GCCGTCAAGC TGGTGATCGT CAAGAAGGAC GAGTCGCTGA CCGAAGCGCA GGTGCGCGAA TACTGCAGAG CAAACCTTAC GGGTTACAAG CAGCCGCGGA TCGTGGAGTT CCGTGGCGAA CTCCCGAAGA CGCCAGTCGG AAAGATCCTG CGGCGCGAAC TGCGCGACGT CAAGAAGTAA
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Protein sequence | MTDRPWLSSY PQGVPADIDA SQYSSLVGLM EESFARYADR TAYSFMGKDV SYAETDKLSK AFGAYLQGLG LAKGDRVAVM MPNCPQYPIA VAAILRAGLI LVNVNPLYTP RELEHQLKDS GAKAIVIMEN FGTTLQQCIA ATPIKHIVLA AMGDRLGFLK GALVNYVVRN VKKLVPHYSL PGAVRFNDAL DQGAGRTLKA PALGPDDVAV LQYTGGTTGV SKGAVLLHRN VIANVLQSEA WNEPVMAQVP AGEQPTSVCA LPLYHIFAFT VGMMLNMRTG GKLILIPNPR DLAGVLKELS KHTIHSFPAV NTLFNGLANH PDFNTVNWKN LKVSVGGGMA VQAAVAKLWL EKTGCPICEG YGLSETSPSA TCNPTNSKAY TGTIGLPLPS TWLKLLDDEG REVPPGQPGE IAIKGPQVMA GYWQRPDETA KVMTPDGYFK SGDIGVVDER GYFKVVDRKK DMILVSGFNV YPNEIEDVVA QIPGVLECAA VGVADEKTGE AVKLVIVKKD ESLTEAQVRE YCRANLTGYK QPRIVEFRGE LPKTPVGKIL RRELRDVKK
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