Gene Vapar_0380 details

Gene Information

• Locus tag: Vapar_0380
• ID: 7973524
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Variovorax paradoxus S110
• Kingdom: Bacteria
• Replicon accession: NC_012791
• Strand: +
• Start bp: 413101
• End bp: 415074
• Gene Length: 1974 bp
• Protein Length: 657 aa
• Translation table: 11
• GC content: 70%
• IMG OID: 644790983
• Product: histidine kinase
• Protein accession: YP_002942309
• Protein GI: 239813399
• COG category: [T] Signal transduction mechanisms
• COG ID: [COG4585] Signal transduction histidine kinase

Plasmid Coverage information

• Num covering plasmid clones: 11
• Plasmid unclonability p-value: 0.810149
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGAGCCTCG GATCTGCGCG CCGGCTGCTC GAACATTTCT CCAGATACCG CTTTGCCTCC 
TTCTGGGCGA ACGTGGTGCT CGCCGCGTCC GTGGCGCTGC TGGTGGCCAT GGCCGCCTTT 
TTCGGCACCA GCGCTGCGCA GCACAACGCG GCGCTGCACC TGACGCAGGC CGACTGGCAG 
GTGCAGGACG CACCCGGCTT CCGTGCACTG CCGCTTGCCG TCGACAGCAA GGCCCTGCCT 
TCCGCCTGGC AGCCGGTCGA ACTGCCGCTG GCGCTGCCCA TTGCGCTGCT GCGCCAGGCC 
GACGGCAGTG CATCGGCGGG CGCGACCCGC ATCACCTGGC TGCGGATCTC CACGCGCGGC 
CTGCCCGCCA CGCAGGCACC GCTCGCGCTC TACGGCGCGC GCATCAAGAC CGACGGCACC 
ATCGCGGTGT ATGCCAACGG GCGGCAGGTC CACCGCGCGC AGGTGCAGGG CCCGCTGTGG 
AACAGCACCC GCACGCCGCT GTGGGTGCTG CTGGGCAAGA CGACCGACGG CGCGCCGCTG 
GACGAGATCC TGGTGCGGAT GGAGCACACA CGCGGCGCGC AGGTGGCGGT TTCGTCGCTG 
TGGCTTGGGC CCGCCGAAGC GCTGGAGCCG CGCTACCGCA TGCGGCAGTG GCTGCAGCAG 
GAGCTGCCGG CCATGCTCAG CACGGCCTTC ATGGCGGTGG GCGTGTTCGC GCTGTTCGTG 
TGGTTCAGGC GCAGCCACGA AACCGGCTAC CTGCTCTTCT TCAACCTGGC GACCACCTCC 
TTCCTGCGCA GCCTGCATTT CTATGTCGGC GTTCCGGTCG CCAACGACTG GTTCGCCTGG 
CTCACGGTCA ACTCGCTGTT CTGGCTGGTG GCGGTGGTGC ACTTCGCGCT GCGCCAGCTG 
CACGGCCGAC CGCTGCGGTG GTTCACCGGC GCGGTGGTGG CGTGGACGGT ACTGACCGGC 
GTGCTGACGC TGCCGGGCCT GGCGATCCTG AGGAACACGC CGCAGGTCAC GCCGCTGATC 
TACCTGGGCG CGGCGCTGAT GGGGGTCGCC GTTGCGCTGG TGGGCGGCAT CAGCGCCTGG 
CGCCGCTCCG GCGAGGGCCG CCTGGTGGCC GTGGGCATCG GCGTGTGCGT GCTGCTGGGG 
GTGTCCGACT GGCTGCTGCA GAACAATTTC GTGAGCCCCG AGGGCTGGTA CCTGGGCGCC 
TACACCAACG CCGTCACCTT CAGCGTGTTC GGGGTGCTGC TGTACCGGCG CTACGTCAAT 
GCCATTGCCG AGGTCGAGCG CGTCAACGCC AGCCTGGCCC AGCGCCTTGC GGCGCGCGAA 
GCCGAGCTCG AGCTCAGCCA CCGGCGGCTG CGCGAGGTCG AGAGGAAGCA GACCATCAGC 
GACGAGCGCC AGCGCCTCAT GCAGGACATG CACGACGGCC TGGGCTCCTC GCTGATCAGC 
GCCATCCGCT CCGTGGAGGG CGGCAGCATG AGCGACGACA AGGTCTCGCA GGTGCTCAAG 
AGCTGCCTGG ACGACCTCAA GCTCACCATC GATTCGATGG AGCCGCTCGA GGACGACCTG 
CTGCTGCTGC TGGCCACGCT GCGCTACCGG CTCGGCCCGC GGCTCGAGAG CTCGGGCGTG 
GCGCTGCAAT GGCAGGTGCA GGAACTGCCG GCGCTGGACT GGCTCGACCC GACCAGCGCG 
CTGCACATCC TGCGCATCGT GCAGGAGAGC ATCGCCAACG TGCTGCGCCA TACGCGCGCC 
ACCGAGATCC GGGTGGCCAC CGAGCGCCAG GCATCGGGCG TGCGGGTGAG CATCGAGGAC 
AACGGCCAGG GCTTCGACGT CGAGAAGGCC TTGGCCGGTG CCGGCGGGCG CGGCATGCAG 
AACCAGCAGC GCCGGGCGCA GGCCGTCGGG GGCGAAGTCT CGTGGCGCTC GGGGCCTGCG 
GGCACGCTGT TCACGCTCTG GCTGCCGCTC CAGCGCGGCG TGCGGGCGGC GTAG 

 

Protein sequence

MSLGSARRLL EHFSRYRFAS FWANVVLAAS VALLVAMAAF FGTSAAQHNA ALHLTQADWQ 
VQDAPGFRAL PLAVDSKALP SAWQPVELPL ALPIALLRQA DGSASAGATR ITWLRISTRG 
LPATQAPLAL YGARIKTDGT IAVYANGRQV HRAQVQGPLW NSTRTPLWVL LGKTTDGAPL 
DEILVRMEHT RGAQVAVSSL WLGPAEALEP RYRMRQWLQQ ELPAMLSTAF MAVGVFALFV 
WFRRSHETGY LLFFNLATTS FLRSLHFYVG VPVANDWFAW LTVNSLFWLV AVVHFALRQL 
HGRPLRWFTG AVVAWTVLTG VLTLPGLAIL RNTPQVTPLI YLGAALMGVA VALVGGISAW 
RRSGEGRLVA VGIGVCVLLG VSDWLLQNNF VSPEGWYLGA YTNAVTFSVF GVLLYRRYVN 
AIAEVERVNA SLAQRLAARE AELELSHRRL REVERKQTIS DERQRLMQDM HDGLGSSLIS 
AIRSVEGGSM SDDKVSQVLK SCLDDLKLTI DSMEPLEDDL LLLLATLRYR LGPRLESSGV 
ALQWQVQELP ALDWLDPTSA LHILRIVQES IANVLRHTRA TEIRVATERQ ASGVRVSIED 
NGQGFDVEKA LAGAGGRGMQ NQQRRAQAVG GEVSWRSGPA GTLFTLWLPL QRGVRAA