| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Vapar_0373 |
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| Symbol | |
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| ID | 7973517 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Variovorax paradoxus S110 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_012791 |
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| Strand | - |
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| Start bp | 403003 |
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| End bp | 404043 |
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| Gene Length | 1041 bp |
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| Protein Length | 346 aa |
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| Translation table | 11 |
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| GC content | 66% |
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| IMG OID | 644790976 |
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| Product | sugar ABC transporter |
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| Protein accession | YP_002942302 |
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| Protein GI | 239813392 |
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| COG category | [G] Carbohydrate transport and metabolism |
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| COG ID | [COG1879] ABC-type sugar transport system, periplasmic component |
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| TIGRFAM ID | [TIGR01409] Tat (twin-arginine translocation) pathway signal sequence |
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Plasmid Coverage information |
| Num covering plasmid clones | 19 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGAGGCGAA ATTTCCTGAA GTCCGCTGCG GCCGCCGGTA TCGGCCTGGC CGGCACCAGC
GCATTTGCGC AATCCACCCC CACGCCCGCC GCCACCGGAT TGCGCGGCAA CGCGAGCGAC
GTCTACGTGA TGAACGTGAT GGTGTCGGGC GTCGAATACT GGTTTCCGGT CTACGAGATG
ATGAAGCAGC TGGGCCGCAC GCTGGGCGTG CGCACGCGCT ACACCGGTAC GCCCGAGTAC
GACGTGAACA AGCAGCTGGC CTCCTTCGAG CAGGAGCTGG CGCGCAAGCC CGCGGGCATC
CTGCTGCACC CGATGAACCC CGATCCGTTC ATCGAGCCGA TCAACCGGGC GGTGGCCATG
GGCATCCCGG TCGTGACCTT CGCGGCCGAC TCGCCCAACT CCAAGCGCGC TTCCTTCGTC
ACGTCTGACA ACGACCGCGA GGGCACGCAG GCGGCCGACG CGATTGCCGC GGCGCTGGGC
GGCAAGGGCG AATACGCGGT GCTCGAGAAC CCGGGCCAGG ACAACCACGA CCGCCGCATC
GCGGCCTTCG TCAACCGCAT GAAGACCAAG CACGCGGGCA TGAAGCTGGT CGGCCGCGCC
GCCAGCAACC AGGACCCGAG CAAGGCCTAC CAGGCGGTGC TGAGCCTGGC GCAGGCCAAC
CCGAACCTGG GTGCGCTGTT CATGCCCGAG GCCAACTCGG CGCTGGGCGC CGCGCAGGCC
AAGATCGAGT CGAAGAAGAA CATCCGCGTG ATGTGCTGCG ACGTGAACGC CAAGATCCTC
GACATGATCA AGGCCGGCGA CGTGTTCGGC GCCATCAATC CGAACCAGGG CATGCAGGGC
TACATGGGCA TGATGATGCT GTTCCTGGCC AAGAACCCCT CGCTCATCGA TCCGATGAAC
GACGCCAAGC GCAACGGCAC CAATCCGATG TCGGTGCCGT TCCTGGACAA CGGCCTGTCG
GTGGTCAGCA AGGCCAATGC CGACGACTTC TACTGGGACA AGTACCTCGC GCGCCGCGGC
ACCAAGGGAA TCGGCGAGTG A
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| Protein sequence | MRRNFLKSAA AAGIGLAGTS AFAQSTPTPA ATGLRGNASD VYVMNVMVSG VEYWFPVYEM
MKQLGRTLGV RTRYTGTPEY DVNKQLASFE QELARKPAGI LLHPMNPDPF IEPINRAVAM
GIPVVTFAAD SPNSKRASFV TSDNDREGTQ AADAIAAALG GKGEYAVLEN PGQDNHDRRI
AAFVNRMKTK HAGMKLVGRA ASNQDPSKAY QAVLSLAQAN PNLGALFMPE ANSALGAAQA
KIESKKNIRV MCCDVNAKIL DMIKAGDVFG AINPNQGMQG YMGMMMLFLA KNPSLIDPMN
DAKRNGTNPM SVPFLDNGLS VVSKANADDF YWDKYLARRG TKGIGE
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