| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Vapar_0368 |
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| Symbol | |
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| ID | 7973512 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Variovorax paradoxus S110 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_012791 |
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| Strand | - |
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| Start bp | 393725 |
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| End bp | 398458 |
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| Gene Length | 4734 bp |
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| Protein Length | 1577 aa |
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| Translation table | 11 |
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| GC content | 68% |
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| IMG OID | 644790971 |
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| Product | Ricin B lectin |
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| Protein accession | YP_002942297 |
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| Protein GI | 239813387 |
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| COG category | [P] Inorganic ion transport and metabolism |
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| COG ID | [COG1858] Cytochrome c peroxidase |
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| TIGRFAM ID | [TIGR02276] 40-residue YVTN family beta-propeller repeat |
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Plasmid Coverage information |
| Num covering plasmid clones | 4 |
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| Plasmid unclonability p-value | 0.18771 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGAAGATCC GGTATTTCCT GATGGCGTTC CTGGCCCCGC TCGTCACATT GCTGACGCAT
GCGGCCATCA CCGGGGTCAG CCCGATGACC ACCCTCGGCA ACATGGCCAC GGCGGTTTCC
GAGGCCGTTG CCGACCCGCT CCCGCTGCAG GGGCCGGGCC TGGGCAACCT CAGCTACACA
TCGGCGGAAC TGTTCAAGCC GGTGTCGATG ATCACGAGCC TCGCGCACCC GCTCGACCCG
GCGCACAGCA GTGCCTACGA GTCGCGAGAG GTGCCCGCCA CCTACCCGGG CCGCAAGGAC
TACGGCATGA ACGCGGGCAT CATGGTCAAC GGCTACTTCC TGACCTCCTT CGCGCCGGAC
AGCGGCCTGG GCCCGGGCGG CTTCCTGCTG TACGACGTGT CGAACCCGCG CCAGATCCGG
CTGGTCAAGA AGATCTACGA ACCCGATGAC GCGACAGGTG GCCGCACCAA GGAGTTCCGC
GAAACGCACT CCTTCGGCAC CGCGAAGATC GGCGGCAAGA CGTACGTGGT GCTGCCCAGC
ATCAACGGCG TGGAGTTCTG GGACTTCACC GACGTCAACG ACATCAAACA GGTGAAGAAG
CTGGCGCTGC CCGGCGTCAA CGCGGGCGAC TACGAGAACG TCGCCTGGCA GCTCTGGTGG
CAGGCGCCCT ACCTGTACGT GGCCTCGGCG GGCCGCGGCA TCTTCATCGT CGATGCTGCG
GACCCCGCGA ACGCCGTGGT GGCGAACCGC GGCGCCGGCA AGCCCAACCC GGTGCCCACG
GGCGAACTCG GCAACTTCCG GATCGGACCG ATCTTCACCA TGGGCAACCA CATGGTGCTG
ACCGCGATGG AAAGCAATGG CGGCTTCGCG AGCCTCGACA TCTCCGACCC GCTCAACCCC
AAGGTGCTCG ATTCCATCGT GGGCACCACG CCGTTCTACT ACGCCACCTG CTTCGACGGC
AGGAACCTGC ACGTCTCGAC GCGCGGCAGC GGCGCGAAGA TGTACAGCTA CGACCTCTCC
GACCGCTCGC GCTTCGTGGC CGAGGACAAC CGGCTGGTCA TCGACGAACA GCTGTACTGC
GCCACGCAGG ACAACTACGT GATCCAGGGC GCGCAAACGC GCATCCACAA GGTCGACGTG
AGCAATCCGC TCAATCACGT GGAGGTGGGC CGCGGCAGCA TCCTGCGCGA GGACGACCCG
AACTACTCGC ATTCGGACAA CGGCCAGGTC GCGATGTTCG GCAACCTGGT CTTCGTGGGC
AACGACCACG GCTCGGGCAG CGGCTTCGTC GTGCATGCGG TGGACCCGGA CACCACCCGG
CCCGAGGTGA AGCAGGTCTC GCCGGCCAAC GGCGCGAAGC AGCAGGCCCT GAGCTCGCGC
ATCGGCCTGG GCATGACGGA CAACATCCGC CCCGAGAGCG TGAACGCCAA CACCTTCATC
GTGCGGCCGG TGGGCGGCAA CACGCTCGCG GGCACCTACA GCGTGCAGCT GGGCATCATC
AATTTCCACC CGGAGCTGCC GCTTTCTCCG GGCACCAGCT ATGAAGTGTT CCTGCCCGCC
AACGGGGTGA AGGACTATGC GGGCAATGCC ATCGGCGCCG ACTTCAAGTC GACCTTCAAC
ACCGGCAACG CGACCGACAT CAACCTGCAG CACTACTGGA CGCTGGCCGG CAACCTGTCC
GACCCGATCG GCAGCAACAA CGGCACGCCG GCGTCGGGCG ATACCTTTGA AAGCATCGGC
ATGAGCTTCG CGAACCGCAC CGCCGGCGTG CCGCTGAAGA ACGACAGCGT CGCCACCGTG
CTCGGCGGCA CCGCGTCGCT GAGCTTCTAC ATGAAGACCA CGCAGGCCGG CAGCGCGAAC
CCATGGACCG CACCGGGCAT CTTCGGGCGC GACCAGGCCA GCGGAGCGGA CGACGTGTTC
TGGGGCTGGA TCGACGGCAG CGGCTTCATG AACCTCTCGG TCGCGAACAA GGCCGCCAAC
AACCCCGGCA CCCGCTCGCT GGCGGCCGTG AACGACGGCA ACTGGCACCA CGTGGTGATG
ACGCGCGACG CGGCCTCGGG CGCGCAGGCC ATGTACGTGG ACGGCGTGAA GACCAGCTCC
ACGGGCCTCA CCGGCACCAA GGGGCTCGCG AACAAGTTCC AGGTCATGGG CCAGATCCAG
GGCAACGCCG ACCTGTTCAA GGGCACGCTG GCGGAAGTGC GCGTGTACAG CCGCGTGCTC
ACCGACGGCG AGGTGGCCAC GCTGCGCGGG CAGGCGATCA TCGGCGACCC CGGCATCGGC
GGCGGTCCGA AGATCGTCAA CGGCCAACTG GTGTTCGACC CGGCCACGCT CGGCAGCAGC
GGCGCGCAGT TCCGCTGGAA CTTCGGCGAC GGCACGCGGA CGGCCTACTC CACCCAGCCG
CGCTACACCT ATACCTACAC GCGACCGGGG CACTACACCG TGACGCTGAC GGTGCGCGAC
GCAAGCGGCC GCGAGACTTT CTACACCTAC AACCTCACCG TGATCGTGCC GGTCACGGCG
CGGGCGCCCA CGCACACGAC CAACATCGCA GGCGATGCGA ATTCGGTCTA CTCGCTCAAC
CCCGACAGCG GCACGGTCGC CGCCGTCGAC GCGCAGACCC TGGCCAAGCG CTGGGAAGTG
CGCGTGGGCG ACGAGCCGAA GACGCTGGCC GTGGGACCGG ATGGGCGCAT CTGGGTCGCG
GTGCAGGGCG AGGACAAGCT GGTGGCGCTC AGCGCGGCCG ACGGCAGCCT CTCGGCCACC
GTGCCGCTGG CCTACGGCAG CGGCCCCTAC GGCGTGGCCT TCACGCCCGA CGGCGCGAAG
GGCTTGCTGA CGCTGGAGAG CAAGTCGGTG CTGATGAGCT TCGACCCGAG CAACGGCGCC
ACCACCGGCG CGGTTGCGCT CGAAGGCAGC CTGCGCGGCA TTGCCGTGAG CTCCGATGCG
CAGGTGGCCT ACGTCACCCG CTTCAAGTCG AAGCTGACGG GCGGCCAGCT GCACAAGGTG
AACCTGCAGA GCATGAGCGC GATGCCCACG ATCGCGCTGC CGGTGGACAC CACCACGGTG
GACACCGAGA GCCGCGCGCG CGGCGTGGCC AACTACCTGA GCCAGGTGGT GATCTCGCCC
GACGGCCGGC GCGCGGTGCT GCCTTCGAAG AAGGACAACA TCGTGCGCGG CCGCTTCCGC
GACGGCGTGG ACCTGACGCA CGACCAGAGC GTGCGTTCCA TCCTCTCGCA GGTCGACCTG
CAGGCGGCGG CGGAAGTGTT CGGCGAGCAG ATCGACTTCG ACGACCGCGC ACCGGCGCGT
GCGGCGCTGT TCTCTCCGCC CGGCGACTAC CTCTTCGTGG CGCAGATGGA AGGCAACCGC
GTCGCCATCG TCGACCCGTA CAGCCGGGCC GTGCGCGGAG AGATCAACGC GAGCAGTGCG
CCGCACGGCC TGTACCTGGA CGCGGCGCGC AAGCGGCTGT TCGTCAACAA CTTCCTTGCG
CGCTCGGTGT CGGTGCACGA CGTGTCGCTG GTGCTATCGT CGGAATCGGC GGCGGCGACC
TTCCTGCAGA ACGTGGCGAC GGTCGCGCAG GAGCCGATGG CGGCCGCGGC GCTGCGCGGC
AAGCAGGTGT TCTACAACGC CTCCGACCGG CGCATGAGCA AGGACAACTA CATCTCCTGC
GCGAGCTGCC ATGCGGACGG CGGCGATGAC GGCATGGTGT GGGACTTCAC GCAGCGCGGC
GAGGGCCTCC GACGCACCAT CAGCCTCATG GGCCGGCGCG GCGCGGGCCA CGGCAAGATG
CACTGGACCG CCAACTTCGA CGAGGTGCAG GACTTCGAGA ACGACATCCG CAACGAGTTC
GGCGGCACGG GCTTTCTGAC GAATGCGGAT TTCGCCGCCA CGGTCGACCC CTTGGGCGCG
CCCAAGGCCG GCAAGAGTGC GCAGCTCGAC GATCTTGCGG CCTACCTGAG TTCGCTGAAC
AAGTACATGC GCAGCCCGGC GCGTGCGGCG GACGGCAGCT TGAGCGTGGA GGCGGCGCGC
GGCCAGACGG TGTTCAACAC CGCGCAGTGC GCCACCTGCC ACACCGGCGG TACTTTCCGC
GACGGCCTGC GGCACGACGT GGGCACGATC CAGCTCTCGT CGGGCAAGGG CCACAACCAG
CCCCTCGCGG GGCTGGGCTT CGACACGCCG ACGCTCTCGG GCACCTGGAA CACGGCGGCC
TTCTTCCACA ACGGGCAAGC CGCGACGCTG CAGGACGTGC TGAACAGCGG CCACGGCAAT
GCCTCGAGCC TGCCGCCAGC GGACGTGGTG GCGCTGCGCG AGTACGTGCG CTCGCTGGAC
ACGGCCCCGG CGGTGGTGAC GCGGCTGCGC TCGGACCTCA ATCCGACGAT GTGCGTGAAC
ATCAAGGGCG GGGCGACGGC GAGCGGCACG GTGGCGGTGC AGTGGCCCTG CGGCACGGCG
AGCCACGAGA AGTTCACGGT GACGTCGGTC ACGGGCGGCT ATGTGCAGCT GGTGGCCGAG
CACAGCGGCC TGTGCCTGGC GCAGAACGGC ACCGCGACGA CCAACGCGCC GGTGGTGCAG
CTGGCATGCA CGGTGGGCAA CACGGCGCAG TGGAGTCTGG CCGTCGGCAC GCTGCGCAAC
CGCGCCTCGG GCTCGTGCCT CGACGTGCCG AATGGCTCGA CGACGCAGGA CACGGCGCTG
ATCACGTGGA CCTGCAATGG GGGGAACAAC CAGAACTGGA CGCAGCTGCC TTAG
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| Protein sequence | MKIRYFLMAF LAPLVTLLTH AAITGVSPMT TLGNMATAVS EAVADPLPLQ GPGLGNLSYT
SAELFKPVSM ITSLAHPLDP AHSSAYESRE VPATYPGRKD YGMNAGIMVN GYFLTSFAPD
SGLGPGGFLL YDVSNPRQIR LVKKIYEPDD ATGGRTKEFR ETHSFGTAKI GGKTYVVLPS
INGVEFWDFT DVNDIKQVKK LALPGVNAGD YENVAWQLWW QAPYLYVASA GRGIFIVDAA
DPANAVVANR GAGKPNPVPT GELGNFRIGP IFTMGNHMVL TAMESNGGFA SLDISDPLNP
KVLDSIVGTT PFYYATCFDG RNLHVSTRGS GAKMYSYDLS DRSRFVAEDN RLVIDEQLYC
ATQDNYVIQG AQTRIHKVDV SNPLNHVEVG RGSILREDDP NYSHSDNGQV AMFGNLVFVG
NDHGSGSGFV VHAVDPDTTR PEVKQVSPAN GAKQQALSSR IGLGMTDNIR PESVNANTFI
VRPVGGNTLA GTYSVQLGII NFHPELPLSP GTSYEVFLPA NGVKDYAGNA IGADFKSTFN
TGNATDINLQ HYWTLAGNLS DPIGSNNGTP ASGDTFESIG MSFANRTAGV PLKNDSVATV
LGGTASLSFY MKTTQAGSAN PWTAPGIFGR DQASGADDVF WGWIDGSGFM NLSVANKAAN
NPGTRSLAAV NDGNWHHVVM TRDAASGAQA MYVDGVKTSS TGLTGTKGLA NKFQVMGQIQ
GNADLFKGTL AEVRVYSRVL TDGEVATLRG QAIIGDPGIG GGPKIVNGQL VFDPATLGSS
GAQFRWNFGD GTRTAYSTQP RYTYTYTRPG HYTVTLTVRD ASGRETFYTY NLTVIVPVTA
RAPTHTTNIA GDANSVYSLN PDSGTVAAVD AQTLAKRWEV RVGDEPKTLA VGPDGRIWVA
VQGEDKLVAL SAADGSLSAT VPLAYGSGPY GVAFTPDGAK GLLTLESKSV LMSFDPSNGA
TTGAVALEGS LRGIAVSSDA QVAYVTRFKS KLTGGQLHKV NLQSMSAMPT IALPVDTTTV
DTESRARGVA NYLSQVVISP DGRRAVLPSK KDNIVRGRFR DGVDLTHDQS VRSILSQVDL
QAAAEVFGEQ IDFDDRAPAR AALFSPPGDY LFVAQMEGNR VAIVDPYSRA VRGEINASSA
PHGLYLDAAR KRLFVNNFLA RSVSVHDVSL VLSSESAAAT FLQNVATVAQ EPMAAAALRG
KQVFYNASDR RMSKDNYISC ASCHADGGDD GMVWDFTQRG EGLRRTISLM GRRGAGHGKM
HWTANFDEVQ DFENDIRNEF GGTGFLTNAD FAATVDPLGA PKAGKSAQLD DLAAYLSSLN
KYMRSPARAA DGSLSVEAAR GQTVFNTAQC ATCHTGGTFR DGLRHDVGTI QLSSGKGHNQ
PLAGLGFDTP TLSGTWNTAA FFHNGQAATL QDVLNSGHGN ASSLPPADVV ALREYVRSLD
TAPAVVTRLR SDLNPTMCVN IKGGATASGT VAVQWPCGTA SHEKFTVTSV TGGYVQLVAE
HSGLCLAQNG TATTNAPVVQ LACTVGNTAQ WSLAVGTLRN RASGSCLDVP NGSTTQDTAL
ITWTCNGGNN QNWTQLP
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