| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Vapar_0351 |
|---|
| Symbol | |
|---|
| ID | 7973495 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Variovorax paradoxus S110 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_012791 |
|---|
| Strand | - |
|---|
| Start bp | 377501 |
|---|
| End bp | 377944 |
|---|
| Gene Length | 444 bp |
|---|
| Protein Length | 147 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 67% |
|---|
| IMG OID | 644790954 |
|---|
| Product | thioesterase superfamily protein |
|---|
| Protein accession | YP_002942280 |
|---|
| Protein GI | 239813370 |
|---|
| COG category | [I] Lipid transport and metabolism |
|---|
| COG ID | [COG1607] Acyl-CoA hydrolase |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 25 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGTCCTCCA TCACCCTTCG ATTCCTGGCC GAGCCCAGCA CCGTCAACTT CGGCGGAAAG
GTCCACGGCG GCACCGTCAT GAAATGGATC GACGAGGCCG GCTACGCCTG CGCCACCAGC
TGGGCCAAGC GCTACTGCGT GACGGCCTTC ATCGGCAGCA TCCGCTTCCA TCATCCGATC
ATGATCGGAG ACCTGGTCGA GGTCGAGGCC CGGCTGGCCT ACACCGGCAC CACCAGCATG
AACATCTCGG TCGAGGTGCG CAGCGGCGAC ATGAAGGGCG GCACCATGGA CAAGACCACC
GAGTGCCTTA TCGTCTTCGT CTCGGTCGAC TCGCACGGCC GGCCGCTGCC GGTGCAGCCC
TACGTGCCGG GCACGCCGGG CGAAATGGCG CTGGCGGAGC GCGCCAAGAC CCACCTCGAT
GCCAGCCGCG CCGCCGGGCA ATAG
|
|---|
| Protein sequence | MSSITLRFLA EPSTVNFGGK VHGGTVMKWI DEAGYACATS WAKRYCVTAF IGSIRFHHPI
MIGDLVEVEA RLAYTGTTSM NISVEVRSGD MKGGTMDKTT ECLIVFVSVD SHGRPLPVQP
YVPGTPGEMA LAERAKTHLD ASRAAGQ
|
|---|
| |