Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Vapar_0345 |
Symbol | |
ID | 7973489 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Variovorax paradoxus S110 |
Kingdom | Bacteria |
Replicon accession | NC_012791 |
Strand | - |
Start bp | 372472 |
End bp | 373362 |
Gene Length | 891 bp |
Protein Length | 296 aa |
Translation table | 11 |
GC content | 68% |
IMG OID | 644790948 |
Product | transcriptional regulator, AraC family |
Protein accession | YP_002942274 |
Protein GI | 239813364 |
COG category | [K] Transcription |
COG ID | [COG4977] Transcriptional regulator containing an amidase domain and an AraC-type DNA-binding HTH domain |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 19 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGCAACCCG ATCTGGAAAT CGTCGAAGTC CGCGGTGACG AATCGTTCAC CGCCTGGGCG CACGGCTATC CGTATCGCAC GGTGCGCTGG CATTTCCACC CCGAGTACGA GATCCAGCTG ATCGTCGAGA CCCGGGGCGT GTATTTCGTG GGCGACCACG TCGGCCACTT CGAGCCCGGC AACCTCGTGC TCATGGGCCC CGACCTGCCG CACAACTGGA TCAGCGACGT GCCCGCGGGC CAGAGCGTGG AGCGGCGCGG CATCGTGATC CAGTTTCCGG CCGGGCTGGC GAAGAACATG GCGGCCACCT TTCCCGAGTT CGAGCGCATC GCGCCGCTCC TGGCCGAATC GGGTTCGGGC CTGCTCTTCC CGGCCGAGAC CGCCGCCGCC GCCAAGCCGC TGATGGAATC GCTGCTGGAG GCGCGCGGGC TGCGCCGCGT GATCCTGCTG CTCTCGCTGC TCGAGCTGCT GGCGGACAGC CAGGACCGCC AGCGGCTCGC GAGCCCTGCG TTCAAGCCCG ACCCCAAGGC CTTCATGTCG CATGCGATCA ACAACGTGCT CGCGCACATC GCGGCCAACC TGGGCGACGA CCTGCGCGAG CCGATGCTGG CCGAACTGGT GGGCCAGAGC CCGAGCGCGT TCTCGCGCGC CTTCCGCAAG CACACGGGCC AGTCGTTCGT GCGCTACGTG AACCGGCTGC GCATCAGCCG CGCCTGCGAG CTGCTCACCA GCAGCGAGAA GCCGGTGCTC GACGTCTGCA TGGACGTGGG CTTCAACAAC GTGTCGAACT TCAACCGGCA GTTCCTGCTG CACAAGCGCA TGCCGCCGAC CAAGTTCCGC AACTTCCATC GCATGCAAGC CGCGGCATCG CGCGCCGCCA GTCCGCCTTA G
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Protein sequence | MQPDLEIVEV RGDESFTAWA HGYPYRTVRW HFHPEYEIQL IVETRGVYFV GDHVGHFEPG NLVLMGPDLP HNWISDVPAG QSVERRGIVI QFPAGLAKNM AATFPEFERI APLLAESGSG LLFPAETAAA AKPLMESLLE ARGLRRVILL LSLLELLADS QDRQRLASPA FKPDPKAFMS HAINNVLAHI AANLGDDLRE PMLAELVGQS PSAFSRAFRK HTGQSFVRYV NRLRISRACE LLTSSEKPVL DVCMDVGFNN VSNFNRQFLL HKRMPPTKFR NFHRMQAAAS RAASPP
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