| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Vapar_0344 |
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| Symbol | |
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| ID | 7973488 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Variovorax paradoxus S110 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_012791 |
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| Strand | - |
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| Start bp | 371439 |
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| End bp | 372359 |
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| Gene Length | 921 bp |
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| Protein Length | 306 aa |
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| Translation table | 11 |
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| GC content | 67% |
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| IMG OID | 644790947 |
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| Product | periplasmic binding protein/LacI transcriptional regulator |
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| Protein accession | YP_002942273 |
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| Protein GI | 239813363 |
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| COG category | [G] Carbohydrate transport and metabolism |
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| COG ID | [COG1879] ABC-type sugar transport system, periplasmic component |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 16 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGAAGAACA TCCTCAAAGC CACCGCCCTC GCCGCCGCAC TGGCCTTCGG TGCCTCCGCC
GCACAGGCGC AGGCACCGAA GCAGCCGCTG CGCATCGGCA TGACCTTCCA GGAGCTCAAC
AACCCCTACT TCGTGACGAT GAAGCAGGCG CTCGAAGAGG CCGCGGCCAG CATCGGCGCG
ACCGTGGTCA CCACCGATGC GCGGCACGAC GTGGCCAAGC AGATCGGCGA CGTGGAGGAC
ATGATCCAGA AGAAGATCGA CATCCTGCTG CTGAACCCGA CCGACTCCAC CGGCGTGCAG
TCGGCCGTGC GCTCGGCCAA GAAGGCGGGG CTGATCGTGG TGGCGGTGGA TGCCAACGCG
CAGGGCCCGG TCGACTCCTT CGTGGGCTCG AAGAACACCG ACGCGGGCCG CCTCGCCTGC
GAATACCTGG CCAAGAGCAT CGGCGAGAAA GGCGACGTGG CCATCCTCGA CGGCATTCCG
GTGGTGCCGA TCCTGGAGCG CGTGAAGGGC TGCCGCGAGG CGCTGGCCAA GTACCCCGGC
ATCAAGGTGG TGAGCACGCA GAACGGCAAG CAGGAGCGCG CCACCGCGCT CACGGTCACC
GAGAACATCC TGCAGGCCAA CAAGGACCTG AAGGGCATCT TCAGCGTGAA CGACGGCGGC
TCGATGGGCG CGCTCGCGGC CATCGAGGCC AGCGGCAAGG ACGTGAAGCT CGCGAGCGTG
GACGGCGCGC CCGAAGCCAT CAAGGCGATG CAGAAGCCGG GCTCGAAGTT CATCGCCACC
ACCGCGCAGT ACCCGCGCGA CCAGATCCGC CTGGCGATCG GCATCGCGCT GGCCAAGAAG
TGGGGCGCCA ACGTGCCGGC CGCGGTGCCG GTGGACGTGA AGCTGATCGA CGCCGAGGGC
GCGAAGACCT TCAGCTGGTA A
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| Protein sequence | MKNILKATAL AAALAFGASA AQAQAPKQPL RIGMTFQELN NPYFVTMKQA LEEAAASIGA
TVVTTDARHD VAKQIGDVED MIQKKIDILL LNPTDSTGVQ SAVRSAKKAG LIVVAVDANA
QGPVDSFVGS KNTDAGRLAC EYLAKSIGEK GDVAILDGIP VVPILERVKG CREALAKYPG
IKVVSTQNGK QERATALTVT ENILQANKDL KGIFSVNDGG SMGALAAIEA SGKDVKLASV
DGAPEAIKAM QKPGSKFIAT TAQYPRDQIR LAIGIALAKK WGANVPAAVP VDVKLIDAEG
AKTFSW
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