| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Vapar_0342 |
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| Symbol | |
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| ID | 7973486 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Variovorax paradoxus S110 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_012791 |
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| Strand | - |
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| Start bp | 368600 |
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| End bp | 369580 |
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| Gene Length | 981 bp |
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| Protein Length | 326 aa |
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| Translation table | 11 |
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| GC content | 67% |
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| IMG OID | 644790945 |
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| Product | inner-membrane translocator |
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| Protein accession | YP_002942271 |
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| Protein GI | 239813361 |
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| COG category | [G] Carbohydrate transport and metabolism |
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| COG ID | [COG1172] Ribose/xylose/arabinose/galactoside ABC-type transport systems, permease components |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 12 |
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| Plasmid unclonability p-value | 0.770654 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGAACGCAA CCGCCACCCA CCCGACACCG CCAGCACCCG ATGGAGGACT CTTCACCCAA
TTGCGCCGCT CGACCGCCTT CCTCCCACTG GTCGGACTGG TAGCGATCTC GGTCTTCATG
ATCGCCGCGA CCGACAACTT CCTGTCCTGG GGCAACCTGC AGAACATCGC GCTGCAGTCG
TCGATCAACG CCATCATCGC GGTCGGCATG ACCGCAGCCA TCCTCACCGG CGGCATCGAT
CTTTCGGTGG GCGCGGTGGT GGCGCTCTCC GGCACGCTGG CCTCGGGAAT GATGGTGCAG
TTCGGGCTGC CGCCGGTGCT CGCCGTGCCG CTCGGCCTCG CCGTCGGCGT GGTGATCGGC
CTCTTCAACG GTTACTGCGT GGCCTACCTG CGCATGCCGC CCATCATCGT GACGCTCGCC
ACCATGGGCA TCGCGCGCGG CATTGCGCTC ATCTACACCG GCGGCTATCC GATCGATGGA
TTGCCCGATT CGTTCGCCTT CCTCGGCGGC GGCGTGCTCG CGGGCATCAA GGTGCCGATC
CTCATCATGC TCGCGACCTA CCTCGTGGCG TATGTGCTGC TCAACATGGC GCCCTTCGGC
CGCTACGTGT ATGCCATCGG CGGCAACGAG GAAGCGACGC GGCTCTCGGG CGTGCGCGTG
TCGCGCTACA AGCTGCTCGT GTATGCGCTG AGCGGCTTCA CCGCCGCCGT CGCAGGCATC
GTGCAGGCGG CGCGCGTGAC CAGCGGGCAG CCCGGCGTGG GCGTGGGCTT CGAGCTCGAC
GCGATCGCGG CGGTGGTGAT GGGCGGCACG TCCATTGCCG GCGGGCGGGG CGCAATCGTC
GGCACGCTGG TCGGTGCGCT GCTGCTGGGC GTGCTGAACA ACGGGCTCAA CATGATCGGC
GTGTCACCGT ACCTGCAATT GATCATCAAG GGCGGCATTG TCTTGCTCGC CATCTTCATC
AGCCGCGAAG CCAAACGCTG A
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| Protein sequence | MNATATHPTP PAPDGGLFTQ LRRSTAFLPL VGLVAISVFM IAATDNFLSW GNLQNIALQS
SINAIIAVGM TAAILTGGID LSVGAVVALS GTLASGMMVQ FGLPPVLAVP LGLAVGVVIG
LFNGYCVAYL RMPPIIVTLA TMGIARGIAL IYTGGYPIDG LPDSFAFLGG GVLAGIKVPI
LIMLATYLVA YVLLNMAPFG RYVYAIGGNE EATRLSGVRV SRYKLLVYAL SGFTAAVAGI
VQAARVTSGQ PGVGVGFELD AIAAVVMGGT SIAGGRGAIV GTLVGALLLG VLNNGLNMIG
VSPYLQLIIK GGIVLLAIFI SREAKR
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