| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Vapar_0330 |
|---|
| Symbol | |
|---|
| ID | 7973474 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Variovorax paradoxus S110 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_012791 |
|---|
| Strand | - |
|---|
| Start bp | 353920 |
|---|
| End bp | 355143 |
|---|
| Gene Length | 1224 bp |
|---|
| Protein Length | 407 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 72% |
|---|
| IMG OID | 644790933 |
|---|
| Product | protein of unknown function DUF445 |
|---|
| Protein accession | YP_002942259 |
|---|
| Protein GI | 239813349 |
|---|
| COG category | [S] Function unknown |
|---|
| COG ID | [COG2733] Predicted membrane protein |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 15 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGAAGCGCG TCGCGCTCGG CCTGCTGTGC GCGGCGGCGC TGCTCTATGC GCTGGCCAGT
GCGCTGGACG GCGAGCATCC GGCCTGGGGC TACGCGGCGG CCTTTGCCGA GGCCGCGATG
GTCGGCGCCA TTGCCGACTG GTTCGCGGTG GTGGCGCTGT TCCGGCATCC GCTCGGCCTG
CCGATCCCGC ACACCGCGAT CATCCCGAGC AACAAGGACC GCATCGGCGC CAAGCTGGCC
GGCTTCATCT GCAACAACTT CCTCGGCACC GGGCAAGTGC TCGCCAAGCT GCGCGAGTTC
GACGCGGCCG GTCGCATCGC CGACTGGCTG GCGCGGCCCG CGAGCGGCCA GAAGCTCGGC
GAATGGGGCG TAGCGGCCAC CCGCTACGGG CTTGCGGCCT TCGACGACGA GCGCGTGCGC
GCCTTCATGG GCCGCGCCGC CGCGGCCGGC CTGCAGAAGA TCGACCTCTC GCGGCTGATG
GGCCAGGCGC TGGACGCGCT CACGGCGGGC GGGCGCCACC AGGCGCTGCT GGACGACGTG
CTGCAGCAGG TGGCTGGCCT GCTCGAAGGC GAGGAGGTGC AGGCGCACAT CACCGAAGCC
ATTGCGCGCG AGATCAAGAC GCTGCGCTAC GTGGGCTTGG ACCAGGTGGC GGCCAAGCTC
GCCACGCGCA AGATCGTGGC GGCCGTGGCG CGCACCATCG CCGAACTCGC GGCCGAGCCC
GAGCATCCGA TGCGCCGGCG CTTCGACCAC TTCGTGGACG ACTTCGTGGT GCGGCTCAAG
CTCGACCCCG AGTTCCAGCA GCGCGGCGAG CAGATCCGCG CCGAGCTGAT CGCGCATCCG
GCGCTCGGCG ACTACCTGCA CGGCATCTGG GGCGAGCTGC TGGCCTGGCT GCACGACGAC
CTGGGCCGCG GCGACTCCAC CATCCGCCAG CGCATCGCAG CGATGGCGGG CGCGCTCGGC
ACGCGGCTGC AGGCCGACGA CGCGATCCGC CGCTGGATCA ACGAGCAGAT CGAGGCGGCC
GCGCCGCTGG CCATCGAGCG CTACCGCGAG GACATCCGCC GCTACATCGA GGAGCGCGTC
GCCGACTGGA ACGCCAGCGA GATGACCAGC GAGCTGGAGC GCCACATCGG GCGCGACCTG
CAGTTCATCC GCATCAACGG CACGCTGGTG GGCGGGCTGG TGGGGCTCTC GATCCACACG
GCGACGCAGC TTCTGCGCGG TTGA
|
|---|
| Protein sequence | MKRVALGLLC AAALLYALAS ALDGEHPAWG YAAAFAEAAM VGAIADWFAV VALFRHPLGL
PIPHTAIIPS NKDRIGAKLA GFICNNFLGT GQVLAKLREF DAAGRIADWL ARPASGQKLG
EWGVAATRYG LAAFDDERVR AFMGRAAAAG LQKIDLSRLM GQALDALTAG GRHQALLDDV
LQQVAGLLEG EEVQAHITEA IAREIKTLRY VGLDQVAAKL ATRKIVAAVA RTIAELAAEP
EHPMRRRFDH FVDDFVVRLK LDPEFQQRGE QIRAELIAHP ALGDYLHGIW GELLAWLHDD
LGRGDSTIRQ RIAAMAGALG TRLQADDAIR RWINEQIEAA APLAIERYRE DIRRYIEERV
ADWNASEMTS ELERHIGRDL QFIRINGTLV GGLVGLSIHT ATQLLRG
|
|---|
| |