| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Vapar_0322 |
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| Symbol | |
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| ID | 7972671 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Variovorax paradoxus S110 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_012791 |
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| Strand | + |
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| Start bp | 343335 |
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| End bp | 344609 |
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| Gene Length | 1275 bp |
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| Protein Length | 424 aa |
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| Translation table | 11 |
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| GC content | 71% |
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| IMG OID | 644790925 |
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| Product | DEAD/DEAH box helicase domain protein |
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| Protein accession | YP_002942251 |
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| Protein GI | 239813341 |
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| COG category | [J] Translation, ribosomal structure and biogenesis
[K] Transcription
[L] Replication, recombination and repair |
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| COG ID | [COG0513] Superfamily II DNA and RNA helicases |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 18 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGCCATTCG ACTCACTGGG CCTGGCCCCC GCGCTCGTGC AGGCTGCCGC CGAAAGCGGC
TACGCCGCGC CGACCGCCAT CCAGGCTGCG GCCATTCCCG CCATTCTGCA AGGCCGCGAC
GTGCGGGGCT CGGCGCAGAC CGGTTCCGGC AAGACCGCCG CATTTTCCCT CCCGCTGCTG
CAGCGGCTGG CTGCCGAACC GGCACAGGCG CCGCGGCGCG TACGCGCGCT GGTGCTCGTG
CCCACGCGCG AACTCGCGGC CCAGGTCGGC GAGACCCTGC GCAGCCTCGC GCAGCACCTG
CCCGAGCGGC TCAAGATCGC GATCGCCTTC GGCGGCGTGT CGATCAACCC GCAGATGATG
AGCCTGCGCG GCGGCGCCGA CATCATGGTG GCCACGCCGG GCCGACTGCT CGACCTGGTG
GAGCACAACG CGCTGAAGCT CGGTGCCGTG TCCACGCTGG TGCTCGACGA GGCCGACCGC
CTGTTCGACC TCGGCTTTGC CGAGGAGCTG GGCCGCATCC TCGCGCTGCT GCCCGCGCGG
CGCCAGAACC TGCTGTTCTC GGCCACCTTC CCGCCCGCCA TCCAGGCGCT GGCCGATGGC
ACGCTGCGCG ACCCCGCGGT GATCGACGTG CAGGGCGAAC CCGGCACCGA GCCCGCCATC
GTGCAGCGCG TGATCGAGGT CGATGCGAAC CGCCGAACGC AGCTGCTGCG CCACCTGCTG
AAGGAAAACG AGTGGGACCG CGTGCTGGTC TTCGTCGCCA CCCAGCATGC GGCGCAGACC
GTGGCCGAGA AGCTCTACAA GAACGGCGTC TATGCGGTGC CCTTCCACGG CGACATTGCG
CAGGGCACCC GCACCGGCAT CCTCGCGCAG TTCAAGGAGA GCCGCTGGGA CGTGGTGATT
GCGACCGACC TGGCCGCGCG CGGCATCGAC ATTGCGCAGC TGCCGGTGGT CATCAACTAC
GACCTGCCGC GCTCGCCCAC CGACTACATC CACCGCATCG GCCGCACGGG CCGCGCCGGC
GAAAGCGGCC TGGCCATCAG CTTCGTGAGC GCGGCCACCG AGGCGCACTT CCGCCTGATC
GAGAAGCGCC AGGGCCTCAG CCTGCCGCGC GAGCGCATCG AAGGCTTCGA GCCCACCGAG
GCGCCCGTGC CGATGGCCGA TGCCTCGGGC ACCGGCGGCA TCAAGGGCAA GCGGCCGAGC
AAGAAGGACA AGCTGCGCGC GGCGGCTGCG CTGGCCGCCG CGCAGCACGA TGCGGGTGAA
AAGAAGAACG ACTGA
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| Protein sequence | MPFDSLGLAP ALVQAAAESG YAAPTAIQAA AIPAILQGRD VRGSAQTGSG KTAAFSLPLL
QRLAAEPAQA PRRVRALVLV PTRELAAQVG ETLRSLAQHL PERLKIAIAF GGVSINPQMM
SLRGGADIMV ATPGRLLDLV EHNALKLGAV STLVLDEADR LFDLGFAEEL GRILALLPAR
RQNLLFSATF PPAIQALADG TLRDPAVIDV QGEPGTEPAI VQRVIEVDAN RRTQLLRHLL
KENEWDRVLV FVATQHAAQT VAEKLYKNGV YAVPFHGDIA QGTRTGILAQ FKESRWDVVI
ATDLAARGID IAQLPVVINY DLPRSPTDYI HRIGRTGRAG ESGLAISFVS AATEAHFRLI
EKRQGLSLPR ERIEGFEPTE APVPMADASG TGGIKGKRPS KKDKLRAAAA LAAAQHDAGE
KKND
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