| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Vapar_0317 |
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| Symbol | |
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| ID | 7972666 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Variovorax paradoxus S110 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_012791 |
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| Strand | - |
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| Start bp | 339875 |
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| End bp | 341386 |
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| Gene Length | 1512 bp |
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| Protein Length | 503 aa |
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| Translation table | 11 |
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| GC content | 67% |
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| IMG OID | 644790920 |
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| Product | protein of unknown function DUF112 transmembrane |
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| Protein accession | YP_002942246 |
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| Protein GI | 239813336 |
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| COG category | [S] Function unknown |
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| COG ID | [COG3333] Uncharacterized protein conserved in bacteria |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 15 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGGACCTGA TCCACAACCT TTCCATCGGT TTCGGCGTTG CCTTCACCTT CACCAACCTG
CTGTACTGCC TGCTGGGCTG CATCCTGGGC ACCTTGATCG GCGTGCTGCC GGGCATCGGC
CCGGTCGCGA CCATCGCGAT GCTGCTGCCC GCCACCTACG CGCTGCCGCC CGTGTCGGCG
CTGATCATGC TGGCCGGCAT CTACTACGGC GCGCAGTACG GCGGCTCGAC CACCGCCATC
CTGGTGAACC TGCCCGGGGA GTCGTCCTCG GTGGTCACCT GCATCGACGG CTACCAGATG
GCAAGGCAGG GCCGCGCAGG CCCCGCGCTG GCCGCGGCGG GCCTGGGCTC GTTCTTCGCG
GGCTGCGTCG GCACGCTGAT CCTCGCGGCC TTCGCGCCGC CGCTGACCGA GCTGGCCTTC
AAATTCGGCC CGGCCGAGTA CTTCTCGCTG ATGACGCTGG GCCTGATCGG CGCGGTGGTG
CTGGCCTCGG GCTCGCTGCT CAAGGCGGTG GCGATGATCG TGCTGGGCCT CTTGCTCGGC
ATCGTGGGCA CCGACGTGAA TTCGGGCGTG GCGCGCTTCA GCTTCGACAT TCCTGAGCTC
ACCGACGGCA TCGGCTTCGT GGTGATTGCC ATGGGCGTGT TCGGCTACGG CGAAATCATC
GGCAACCTCT CGCAGCCCGA CGACGAGCGC GAGGTGTTCA CGCACAAGGT CAAGGGCCTG
TGGCCCACCA AGGAAGACTT CAAGCGCATG ACGCCCGCGG TGCTGCGCGG CACGGCACTG
GGTTCGGCGC TCGGCATCCT GCCGGGCGGC GGCGCGCTGC TGGCGGCCTT TGCGGCCTAT
GCGCTCGAGA AGAAGATCAA GATGCGACCC GGCGAGATCG CCTTCGGCAA GGGCAACATC
CGCGGCGTGG CCTCGCCCGA GTCGGCCAAC AACGCCGGCG CGCAGACCTC CTTCATCCCG
CTGCTCACGC TGGGCATTCC GCCCAACGCG GTGATGGCGC TGATGGTGGG CGCGATGACC
ATCCACAACA TCCAGCCCGG CCCGCAGGTG ATGACCAGCA ACCCCGAGCT GTTCTGGGGC
CTGATCGCCT CGATGTGGAT CGGCAACGCG ATGCTGATCG TGCTGAACCT GCCGCTGATC
GGCATGTGGA TCAAGCTGCT GACGGTGCCC TACAAGTTCC TGTTCCCGGC GATCGTGCTG
TTCTGCGCGA TTGGCGTGTA CTCGACCAAC AACAACACCT TCGACGTGTG GATGGTCGCG
ATCTTCGGCT TCATCGGCTA CCTGTTCCTG AAGCTGCGCA CCGAGCCGGC CCCGCTGTTG
CTGGGCTTCA TCCTCGGGCC GATGATGGAA GAGAACCTGC GGCGCGCGCT GCTGCTGTCG
CGCGGTGCCT GGAGCGTGTT CGTCACGCGG CCGCTGTCGG CCGGCCTGCT GGTGGCCGCG
GCGCTGCTGC TGGGCATCGT GCTGCTGCCG TCGATCAAGG CCAAGCGCGA AGAAGCCTTC
GTCGAGGAAT GA
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| Protein sequence | MDLIHNLSIG FGVAFTFTNL LYCLLGCILG TLIGVLPGIG PVATIAMLLP ATYALPPVSA
LIMLAGIYYG AQYGGSTTAI LVNLPGESSS VVTCIDGYQM ARQGRAGPAL AAAGLGSFFA
GCVGTLILAA FAPPLTELAF KFGPAEYFSL MTLGLIGAVV LASGSLLKAV AMIVLGLLLG
IVGTDVNSGV ARFSFDIPEL TDGIGFVVIA MGVFGYGEII GNLSQPDDER EVFTHKVKGL
WPTKEDFKRM TPAVLRGTAL GSALGILPGG GALLAAFAAY ALEKKIKMRP GEIAFGKGNI
RGVASPESAN NAGAQTSFIP LLTLGIPPNA VMALMVGAMT IHNIQPGPQV MTSNPELFWG
LIASMWIGNA MLIVLNLPLI GMWIKLLTVP YKFLFPAIVL FCAIGVYSTN NNTFDVWMVA
IFGFIGYLFL KLRTEPAPLL LGFILGPMME ENLRRALLLS RGAWSVFVTR PLSAGLLVAA
ALLLGIVLLP SIKAKREEAF VEE
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