| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Vapar_0313 |
|---|
| Symbol | |
|---|
| ID | 7972662 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Variovorax paradoxus S110 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_012791 |
|---|
| Strand | + |
|---|
| Start bp | 335346 |
|---|
| End bp | 337019 |
|---|
| Gene Length | 1674 bp |
|---|
| Protein Length | 557 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 71% |
|---|
| IMG OID | 644790916 |
|---|
| Product | thiamine pyrophosphate protein |
|---|
| Protein accession | YP_002942242 |
|---|
| Protein GI | 239813332 |
|---|
| COG category | [E] Amino acid transport and metabolism
[H] Coenzyme transport and metabolism |
|---|
| COG ID | [COG0028] Thiamine pyrophosphate-requiring enzymes [acetolactate synthase, pyruvate dehydrogenase (cytochrome), glyoxylate carboligase, phosphonopyruvate decarboxylase] |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 15 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGACTTCTC CCCGCACCGG CGGCCAGATC CTGGTCGACC AGCTCATCAC CCACGGCGTC
AGGCAGCTGT TCTGCGTGCC CGGCGAAAGC TTTCTGGCCG TGCTCGATGC GCTGCACGAT
GCTGCCATCG ACGTCACGGT GTGCCGCCAG GAAGGCGGCG CCACGATGAT GGCCGAGGCG
CAGGGCAAGC TCACGGGCCG GCCCGGCGTC TGCTTCGTCA CACGCGGGCC GGGCGCTACC
AACGCGGCGG CCGGCGTGCA CATCGCGCAC CAGGATTCGA CGCCGCTCCT GCTGTTCGTC
GGCCAGGTCG CGCGCGAGGC GCTGGGCCGC GAAGCCTTCC AGGAGCTGGA CTACGGCGCG
GTGTTCGGCA CCATGGCCAA GTGGGTGGTG CAGATCGATG ATCCGGCGCG CGTGCCCGAG
CTGGTCTCGC GCGCCTTCCA CGTCGCCACC TCGGGGCGGC CCGGCCCGGT GGTGATCGCG
CTGCCCGAGG ACATGCTGAC CGAAGCCGCC ACCGTGGCCG ATGCGCAGCC CTATGCGGTG
GTCGAGACCC ATCCGGGCGC GGCGCAGATC GCCGAGCTGC AGCAGCGCCT GTCGCAGGCC
GAGCGGCCCG TGGTCATCCT GGGCGGCAGC CGCTGGTCCG AGGCCGCCAC GCAGCAGTTC
GCGGCTTTTG CCGAGGCGTT CTCGCTGCCG GTGTACTGCT CGTTCCGCCG CCAGATGCTG
CTGTCGGCCG AGCACCCCTG CTACGCGGGC GACCTGGGCC TGGGCGCGAA TCCGCGCATG
CTCGAGCGCA TCCGCAACGC CGATCTCGTG CTGCTGGCGG GCGGCCGTTT GTCGGAAGTG
CCGTCGCAGG GCTACGAGCT GCTCGCCATT CCGCAGCCGA AGCAGGCGCT GGTGCACGTG
CATGCCGATG CCGACGAGCT CGGCAAGCTC TATCGTCCCG CGCAAGGTAT CCACGCCACG
CCGCAGGCTT TTGCCGAGGC GGTGTCCGCG CTGCGCCCGG CCGCGCCGCC CGCCTGGCAG
GCCGGGACGA AGGCCGCGCG CGAGGACTTC CTGCGCTGGA GCGATCCGGC GCCCATCCGC
ATTCCGGGCC CGCTGCAGAT GGGCGAGGTC ATGCAGCACC TGCGCGAGGT GCTGCCGGCC
GACACCATCT TCTGCAATGG CGCGGGCAAC TTCGCGACCT GGGTGCACCG CTTCTGGCCG
TTCCGCGCGT TCGCGAGCCA GCTGGCGCCC ACCAGCGGAT CGATGGGCTA CGGCCTGCCG
GCCGGCGTGG GCGCCAAGCG CCTCTGGCCG CAGCGCGAGG TGGTGGTGTT CGCGGGTGAC
GGCGATTTCA TGATGCACGG CCAGGAGTTC GCCACCGCGG TGCAGTACGG CCTGCCGATC
CTCGTGGTGC TGCTCGACAA CGCCATGTAC GGCACCATCC GCATGCACCA GGAAAAGCAC
TACCCGGGCC GCGTGAGCGC CACGCAGCTG AAGAACCCCG ACTTCCGCGG CTATGCCGAG
GTGTTCGGCG GCCACGGCGA GCGCGTGGCC AGCACCGAGG AGTTCGGCCC CGCGCTGGCG
CGGGCGCGGG CCAGCGGCAA GCCCGCGATC CTGCATTGCC TGCTCGATCC CGAAGCCATC
ACGCCGGCCA GCACGCTGCA GTCGATCCGC AAGGCCGCGC TCGCGGCGGG CTGA
|
|---|
| Protein sequence | MTSPRTGGQI LVDQLITHGV RQLFCVPGES FLAVLDALHD AAIDVTVCRQ EGGATMMAEA
QGKLTGRPGV CFVTRGPGAT NAAAGVHIAH QDSTPLLLFV GQVAREALGR EAFQELDYGA
VFGTMAKWVV QIDDPARVPE LVSRAFHVAT SGRPGPVVIA LPEDMLTEAA TVADAQPYAV
VETHPGAAQI AELQQRLSQA ERPVVILGGS RWSEAATQQF AAFAEAFSLP VYCSFRRQML
LSAEHPCYAG DLGLGANPRM LERIRNADLV LLAGGRLSEV PSQGYELLAI PQPKQALVHV
HADADELGKL YRPAQGIHAT PQAFAEAVSA LRPAAPPAWQ AGTKAAREDF LRWSDPAPIR
IPGPLQMGEV MQHLREVLPA DTIFCNGAGN FATWVHRFWP FRAFASQLAP TSGSMGYGLP
AGVGAKRLWP QREVVVFAGD GDFMMHGQEF ATAVQYGLPI LVVLLDNAMY GTIRMHQEKH
YPGRVSATQL KNPDFRGYAE VFGGHGERVA STEEFGPALA RARASGKPAI LHCLLDPEAI
TPASTLQSIR KAALAAG
|
|---|
| |