| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Vapar_0304 |
|---|
| Symbol | |
|---|
| ID | 7972653 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Variovorax paradoxus S110 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_012791 |
|---|
| Strand | - |
|---|
| Start bp | 325878 |
|---|
| End bp | 327296 |
|---|
| Gene Length | 1419 bp |
|---|
| Protein Length | 472 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 74% |
|---|
| IMG OID | 644790907 |
|---|
| Product | BFD domain protein (2Fe-2S)-binding domain protein |
|---|
| Protein accession | YP_002942233 |
|---|
| Protein GI | 239813323 |
|---|
| COG category | [R] General function prediction only |
|---|
| COG ID | [COG0446] Uncharacterized NAD(FAD)-dependent dehydrogenases |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 13 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGACGGCTT CTTCTTCTGC CGCATTGCAG CCGGTGATCG TCGGCGCGGG GCCGGCCGGC
GTGCGCGCCG CACAGGCGCT GGTGGCGCAT GGCCTGCGGC CGGTGGTGAT CGACGAGGCT
TCGCGCGCCG GCGGCCAGAT CTACCGGCAG CCGCCCGCGA GCCTGGCCCA GCGCAGCGCG
CAGGCGCTCT ATGGCTTCGA GGCCGGCCGC GCCGATGCGC TGCATGCCGC CTTCGATTCA
TTGCGCGAGC GCATCGACTA CCGCCCCGAC AGCCTGGTGT GGAATGCGCA AGGCGGCCGG
CTCGACGTGC TGCACGGCCC GACGCGCAGC ACGTCGAGCC TTTCGTACGG CCAGCTGATC
GTTGCCACCG GCGCCACCGA CCGCGTGCTG CCCGTGCCCG GCTGGACATT GCCCGGCGTC
TACACGCTGG GCGGCGCGCA GGTGGCGCTC AAGTTCCAGG GCTGCGCCAT CGGCGAGCGC
GTGGTGTTCA TGGGCACCGG GCCGCTGCTC TACCTGGTCG CGTATCAATA CGCCAAGGCC
GGAGCGAAGG TCATCGCGGT GCTCGACACC GCGCGGCTCG CCGACCAGCT GGCTGCCACG
CCCGCGATGC TGCGGCAGCC CGCCGTGTTC GCCAAGGGCG TGTACTACGT GGCCTGGCTG
CGCGCGCACG GCGTGGCGCT GCACGGCGGC GTGCGGCCAT TGCGCGTGCT CGGCGATGCA
CAGGAGAGCC GGGTGGCCGG CGTCGCGTGG CACGACGGCC GCGAAGAACG CACGCTGGCC
TGCGATGCCG TCGGCTTCGG CTACGCGCTG CGCTCCGAAA CGCAGCTGGC CGACTTGCTC
GGCTGCCGCT TCGACTACGC GCCGCTGCAC CGCGCCCATC TGCCGGTGCG CGATGCGGCG
GGCCGCTCCA GCGTGCGCGG CGTGTACCTT GCGGGCGACG GCGCCGGCAT CATGGGTGCC
GATGCGGCCG AGTGGGCCGG CGAACGCGCC GCGCTCGCGC TGCTGGCCGA CAACGGCGTG
GCAGTCGATG TGGCGCGCGC CGCCGAGCTC GAACGCAAGC TCGGCAAGCT CGCCGGATTC
CGCGAGGGGC TCGAACGCGC CTTCCCCGTG CCGCGGGACT GGGCCGCGCA TGCGCCCGAC
GAGCTCGTGG TCTGCCGCTG CGAGAACATC ACGGCCGGCA CCTTGCGCCA GACCGTCGCT
GCCGCCGGCG CCGACGAGAT GAATCGCCTG AAGGCGCTGT CGCGCGTCGG CATGGGCCGC
TGCCAGGGCC GCATGTGCGG CGCGGCGGCC GCGGAGATCC TCGCGCAGGC CACGGGGCTG
CCGCTGCAGC AGGTGGGCCG GCTGCGCGGT CAGGCGCCGA TCAAGCCGAT CCCGATCCAC
CTGGCCGCTG CGCCATCCGC CGAAGGAGCC GGCGAATGA
|
|---|
| Protein sequence | MTASSSAALQ PVIVGAGPAG VRAAQALVAH GLRPVVIDEA SRAGGQIYRQ PPASLAQRSA
QALYGFEAGR ADALHAAFDS LRERIDYRPD SLVWNAQGGR LDVLHGPTRS TSSLSYGQLI
VATGATDRVL PVPGWTLPGV YTLGGAQVAL KFQGCAIGER VVFMGTGPLL YLVAYQYAKA
GAKVIAVLDT ARLADQLAAT PAMLRQPAVF AKGVYYVAWL RAHGVALHGG VRPLRVLGDA
QESRVAGVAW HDGREERTLA CDAVGFGYAL RSETQLADLL GCRFDYAPLH RAHLPVRDAA
GRSSVRGVYL AGDGAGIMGA DAAEWAGERA ALALLADNGV AVDVARAAEL ERKLGKLAGF
REGLERAFPV PRDWAAHAPD ELVVCRCENI TAGTLRQTVA AAGADEMNRL KALSRVGMGR
CQGRMCGAAA AEILAQATGL PLQQVGRLRG QAPIKPIPIH LAAAPSAEGA GE
|
|---|
| |