| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Vapar_0301 |
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| Symbol | |
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| ID | 7972650 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Variovorax paradoxus S110 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_012791 |
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| Strand | + |
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| Start bp | 321714 |
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| End bp | 323342 |
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| Gene Length | 1629 bp |
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| Protein Length | 542 aa |
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| Translation table | 11 |
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| GC content | 67% |
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| IMG OID | 644790904 |
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| Product | glucose-methanol-choline oxidoreductase |
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| Protein accession | YP_002942230 |
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| Protein GI | 239813320 |
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| COG category | [E] Amino acid transport and metabolism |
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| COG ID | [COG2303] Choline dehydrogenase and related flavoproteins |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 14 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGAGCGACA ACACATTCGA CTACATCGTC ATCGGCGGCG GCACGGCCGG CGCATTGATG
TGCAACCGGC TGACCCGCAA ATCGCAGCAG CGCACGCTGC TGATCGAGGC CGGCCGCAAG
GACGACTACC ACTGGATCCA CATTCCGGTG GGTTATCTCT ACTGCATCGG CAACCCGCGC
ACCGACTGGC TCTACAGCAC CGAGCCCGAC GCCGGCCTCA ACGGCCGCGT GCTGCGCTAT
CCGCGCGGCA AGACGCTGGG CGGCTGCTCC AGCATCAACG GCATGATCTA CATGCGCGGC
CAGTCGCGCG ACTACGACCA GTGGGCGCAG CTCACGGGCG ACGACGCCTG GCGCTGGCAG
AACGTGCTGC CCGATTTCAA GAAGCACGAG GACTACTACC TCGGCGCCGA CGAGCTGCAC
GGCGCCGGCG GCGAATGGCG GGTGGAGAAG CAGCGCCTGC GCTGGGACAT CCTCGACGCC
TTTGCCGAGG CCGCGGTGCA GGCCGGCGTG CCGCACAGCA CCGACTTCAA CCGCGGCAGC
AACGAAGGCG TCGGCTATTT CCAGGTCAAC CAGAAGAACG GCTGGCGCTG GAACACCGCC
AAGGCGTTCC TGCGGCCGGT CTGCTATGGC CGGCCCAACT TCGAGATGTG GGTCAACGCG
CACGTCACCA AGCTGATCGT CGAGACCCAG CCCGACGGCA GCCGGCGCTG CACCGGCGTG
CAGGTATGGG ACGGCCGCGA GATGGTCATC GCCCATGCCA CGCGCGAGGT GGTGCTGTGC
GCGGGCAGCA TCGGCTCGCC GCAGATCCTG CAGCTCTCGG GCATCGGCCC GGCCGAGCTG
CTGCGCCAGC ACGGCATCGA GGTGGTGCTC GACGCGCCCG GCGTCGGGGC CAACCTGCAG
GACCACCTGC AGATCCGCGC GGTCTACAAG ATCAACGGCG CGCCCACGCT CAACGTGCTG
GCCTCGTCGA TGGTCGGCAA GGCGAAGATC GGCCTCGAAT ACCTGATGAA GCGCAGCGGG
CCGATGAGCA TGGCGCCGTC GCAGCTGGGC GCGTTCACGC GCAGTTCGCC CGAGCATGAA
TGGCCGAATC TCGAATACCA CGTGCAGCCG CTGTCGCTCG ATGCCTTCGG CGATCCGCTG
CACAGCTTTC CGGCCTTTAC CGCGAGCGTG TGCAATCTCA ACCCCACGAG CCGCGGCAGC
GTGCGCATCA AGAGCCCGCG CTTCCAGGAT GCGCCCGCCA TCGCGCCCAA CTACCTGAGC
ACCGACGAAG ACCGCAAGGT GGCGGCCGAT TCGCTGCGCG TGACGCGCCG CATCGCCTCG
CAGCCGGCGC TTGCCAAGTA CAAGCCGGAA GAATGGAAGC CCGGCGTTCA ATACCAGAGC
GACGAAGACC TCGCGCGCCT GGCCGGCGAC ATCGCGACCA CCATCTTCCA TCCGGTCGGC
ACCACGAAGA TGGGCGCCGA TGGCGACCCG ATGGCGGTGC TCGACTCGAA GCTGCGCGTG
CGCGGCGTGC AGGGGCTGCG CGTGGTCGAT GCGGGCGCGA TGCCGACCAT CACGAGCGGC
AATACCAACA GTCCGACCTT GATGATGGCC GAGAAGGCTG CGGGGTGGAT TCTGGAAGCG
AACGGCTGA
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| Protein sequence | MSDNTFDYIV IGGGTAGALM CNRLTRKSQQ RTLLIEAGRK DDYHWIHIPV GYLYCIGNPR
TDWLYSTEPD AGLNGRVLRY PRGKTLGGCS SINGMIYMRG QSRDYDQWAQ LTGDDAWRWQ
NVLPDFKKHE DYYLGADELH GAGGEWRVEK QRLRWDILDA FAEAAVQAGV PHSTDFNRGS
NEGVGYFQVN QKNGWRWNTA KAFLRPVCYG RPNFEMWVNA HVTKLIVETQ PDGSRRCTGV
QVWDGREMVI AHATREVVLC AGSIGSPQIL QLSGIGPAEL LRQHGIEVVL DAPGVGANLQ
DHLQIRAVYK INGAPTLNVL ASSMVGKAKI GLEYLMKRSG PMSMAPSQLG AFTRSSPEHE
WPNLEYHVQP LSLDAFGDPL HSFPAFTASV CNLNPTSRGS VRIKSPRFQD APAIAPNYLS
TDEDRKVAAD SLRVTRRIAS QPALAKYKPE EWKPGVQYQS DEDLARLAGD IATTIFHPVG
TTKMGADGDP MAVLDSKLRV RGVQGLRVVD AGAMPTITSG NTNSPTLMMA EKAAGWILEA
NG
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