| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Vapar_0296 |
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| Symbol | |
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| ID | 7972645 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Variovorax paradoxus S110 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_012791 |
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| Strand | - |
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| Start bp | 316865 |
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| End bp | 317548 |
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| Gene Length | 684 bp |
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| Protein Length | 227 aa |
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| Translation table | 11 |
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| GC content | 74% |
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| IMG OID | 644790899 |
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| Product | protein of unknown function DUF330 |
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| Protein accession | YP_002942225 |
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| Protein GI | 239813315 |
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| COG category | [R] General function prediction only |
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| COG ID | [COG3218] ABC-type uncharacterized transport system, auxiliary component |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 12 |
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| Plasmid unclonability p-value | 0.589399 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGATGACCA TGATGAAGAA GAACGCCGTC CTTCGCCTCC CTCCGCGCCT GGCCGCCTGC
GCCGGCCTCG CGCTGCTGCT GCTTGCGGGC TGCAGCGCCC TGCCCGACAA GCCCGCGCGC
GCCACGCTGT ACGACTTCGG ACCCGGGCCG GCCGCATCGG CCCCAGCCGC CAACCCGCCC
GCGGCCGCGC TGCCCACGCT CGCGCTGGCC GAGATCGAGA GCAACACGCG GCTCGACAGC
ACGCAGATCC TCTACCGGCT CGGCTATGCC GATGCCAACG AGCTGCGCCC CTACGGCCAG
TCGCGCTGGA GCCTGGCGCC GGCGCAGCTG CTGCGCCAGC GGCTGCGCGA CGCGCTCGCC
GAGCGGCGCA CCGTGCTCGG CCCGGAAGAA AGCGCGACCA TTGCGCGCGC CGAGGGCAAG
GTGCCCGACA CGCTGCGCAT CTCGCTCGAC GAGTTCAGCC ACTACTTCGA ATCGGCCAGC
AGCAGCGCCG GCCTGGTGCG CCTGCGCGCC ACGCTGATCC GCGGCACCAC CGGCGGCGAC
CGCGTGCTGG GCCAGCGCAG CTTCACCGTG CGCCGCCCCG CGCCGAGCGC CGATGCACCC
GGCGGCGTCA AGGCGCTGGC CGCGGCCACC GATGCGGCCG TGGCCGAGGT CGTGCAGTGG
GTGGACCAGC TGCCGCGGCA GTAA
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| Protein sequence | MMTMMKKNAV LRLPPRLAAC AGLALLLLAG CSALPDKPAR ATLYDFGPGP AASAPAANPP
AAALPTLALA EIESNTRLDS TQILYRLGYA DANELRPYGQ SRWSLAPAQL LRQRLRDALA
ERRTVLGPEE SATIARAEGK VPDTLRISLD EFSHYFESAS SSAGLVRLRA TLIRGTTGGD
RVLGQRSFTV RRPAPSADAP GGVKALAAAT DAAVAEVVQW VDQLPRQ
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