| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Vapar_0278 |
|---|
| Symbol | pyrE |
|---|
| ID | 7972627 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Variovorax paradoxus S110 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_012791 |
|---|
| Strand | + |
|---|
| Start bp | 298699 |
|---|
| End bp | 299382 |
|---|
| Gene Length | 684 bp |
|---|
| Protein Length | 227 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 67% |
|---|
| IMG OID | 644790881 |
|---|
| Product | orotate phosphoribosyltransferase |
|---|
| Protein accession | YP_002942207 |
|---|
| Protein GI | 239813297 |
|---|
| COG category | [F] Nucleotide transport and metabolism |
|---|
| COG ID | [COG0461] Orotate phosphoribosyltransferase |
|---|
| TIGRFAM ID | [TIGR00336] orotate phosphoribosyltransferase |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 5 |
|---|
| Plasmid unclonability p-value | 0.00941975 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | decreased coverage |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGGCTGTAG ATGGTGTGCA AGGCAGCGCG GTGGCGCAGG ATTTCGTCCA GTTCGCACTC
GACGCAGGGG TGCTGCGCTT TGGCGAGTTC AAGACCAAGG CCGGACGAAT GAGCCCTTAT
TTCTTCAATT CGGGGCTCTT CGACGACGGC GCCAAGATCG CGCGGCTCGC CGGATTCTAT
GCAGACCGGC TGATCGAGAG CGGCGTCGAG TTCGACATGA TCTTCGGCCC CGCCTACAAG
GGCATTCCGC TGGGCGCCAC GGTGGCGGCC GAACTGGCCC GGCGCGGCCG CAACCATCCC
TTTGCCTACA ACCGCAAGGA AGCCAAGGCG CATGGCGAGG GCGGCAACCT GGTGGGCGCG
CCGCTCAAGG GCCGCGTGCT GATCGTCGAC GACGTGATGT CGGCCGGCAC CGCGGTGCGC
GAATCCATTG CCGCCATCGA AGCCGCAGGC GCCACGCCGC ACGCCGTGGC CATTGCGCTC
GACCGGCAGG AAAAAGCCAC CGAGAACGGC GTCGACGTGG ACCACAGCGC CGTGCAGTAC
GTGCGCAACC AGCTGGGCCT GCAGGTGGTG GCGATTGCCA CGCTCGACGA CCTGCTGAAC
TACCTCTCGG GCAGCGCCGC CGCCGACCTG GGCGTGCATC GCGAGCGGGT GCTCGCCTAC
CGCGCGCGCT ACGGCGCCAA CTGA
|
|---|
| Protein sequence | MAVDGVQGSA VAQDFVQFAL DAGVLRFGEF KTKAGRMSPY FFNSGLFDDG AKIARLAGFY
ADRLIESGVE FDMIFGPAYK GIPLGATVAA ELARRGRNHP FAYNRKEAKA HGEGGNLVGA
PLKGRVLIVD DVMSAGTAVR ESIAAIEAAG ATPHAVAIAL DRQEKATENG VDVDHSAVQY
VRNQLGLQVV AIATLDDLLN YLSGSAAADL GVHRERVLAY RARYGAN
|
|---|
| |