Gene Vapar_0273 details

Gene Information

• Locus tag: Vapar_0273
• ID: 7972622
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Variovorax paradoxus S110
• Kingdom: Bacteria
• Replicon accession: NC_012791
• Strand: +
• Start bp: 293845
• End bp: 294549
• Gene Length: 705 bp
• Protein Length: 234 aa
• Translation table: 11
• GC content: 70%
• IMG OID: 644790876
• Product: isochorismatase hydrolase
• Protein accession: YP_002942202
• Protein GI: 239813292
• COG category: [Q] Secondary metabolites biosynthesis, transport and catabolism
• COG ID: [COG1335] Amidases related to nicotinamidase

Plasmid Coverage information

• Num covering plasmid clones: 10
• Plasmid unclonability p-value: 0.221084
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGGCGAACA CCGCATCTCC CCGCCACGTG GCCGCCGAGC CCTATGGCTG GCCCTACAAC 
GGCGCGCTGC GGCCCGGCAA CACCGCGCTC ATCGTGATCG ACATGCAGAC CGACTTCTGC 
GGCACCGGCG GCTATGTCGA CGTGATGGGC TACGACCTTT CGCTGGTGCA GGCGCCGATC 
CAGCCGATCG CGCGCACGCT CGCGGCGCTG CGGCCGCTGG GCTTCCACAT CATCCACACG 
CGCGAAGGCC ACCGGCCCGA CCTGTCCGAC CTGCCCGCCA ACAAGCGCTG GCGCTCGCGC 
CAGATCGGCG CCAACGGCGT GGGCATTGGC GATGACGGGC CGTGCGGGCG CATCCTGGTG 
CGCGGCGAGC CGGGCTGGGA GATCATTCCC GAACTCGCGC CGCTGCCCGG CGAGGTGGTG 
ATCGACAAGC CCGGCAAGGG CTCGTTCTAT GCCACCGACC TGGAGCTGAT CCTGCGCACG 
CGCGGCATCG AGAACCTGAT CCTCGCGGGC ATCACCACCG ACGTGTGCGT GCACACCACG 
ATGCGCGACG CGAACGACCG CGGCTTCGAA TGCCTGCTGC TGTCGGACTG CACCGCCGCC 
ACCGACCATG GCAACCACCT GGCGGCGCTG AAGATGATCA CGATGCAGGG CGGCGTGTTC 
GGCGCGCATG CCACCTCGCA GGCGCTCTTG GCCGCGCTGG ACTGA 

 

Protein sequence

MANTASPRHV AAEPYGWPYN GALRPGNTAL IVIDMQTDFC GTGGYVDVMG YDLSLVQAPI 
QPIARTLAAL RPLGFHIIHT REGHRPDLSD LPANKRWRSR QIGANGVGIG DDGPCGRILV 
RGEPGWEIIP ELAPLPGEVV IDKPGKGSFY ATDLELILRT RGIENLILAG ITTDVCVHTT 
MRDANDRGFE CLLLSDCTAA TDHGNHLAAL KMITMQGGVF GAHATSQALL AALD