Gene Vapar_0265 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagVapar_0265 
Symbol 
ID7972614 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameVariovorax paradoxus S110 
KingdomBacteria 
Replicon accessionNC_012791 
Strand
Start bp285894 
End bp287603 
Gene Length1710 bp 
Protein Length569 aa 
Translation table11 
GC content72% 
IMG OID644790868 
Productallophanate hydrolase 
Protein accessionYP_002942194 
Protein GI239813284 
COG category[J] Translation, ribosomal structure and biogenesis 
COG ID[COG0154] Asp-tRNAAsn/Glu-tRNAGln amidotransferase A subunit and related amidases 
TIGRFAM ID[TIGR02713] allophanate hydrolase 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value0.33811 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGATGGTGC ATGAAGAAAA CGGATCGGCT GCCGCAGCGT GGATTGCCCG CTTTCCCCGG 
CCCGTGCCCG GCGCGGACGC GGGGCCTCTC GCCGGCCTGC GCTTCGCCGT CAAGGACAAC
ATCGACGTGG CCGGCGTGCC CACCACGGCC GCCTGCCCGG CCTTCGACCG CCGGCCGGCT
GAGCACTCGG CCGTGGTGCG GAAGCTGCTC GATGCCGGTG CATCGCTGCT CGGAAAGACC
AACCTCGACC AGTTCGCCTG CGGCCTGAAC GGCACGCGCT CCCCGTATGG CGAAGTGCCC
AATGCCTTCG ACGCGCGCTA CGTCTCGGGC GGCTCCAGTT CGGGCTCGGC CTACGTGGTG
GCCGCCGGCG AGGCCGATTT CGCGCTCGGC ACCGACACCG CCGGCTCGGG CCGCGTGCCC
GCCGGGCTCA ACAACATCGT CGGGCTCAAG CCCTCGCGCG GCCTGCTGAG CGCCTTTGGC
GTGGTGCCCG CCGCCCAGAG CGCGGACTGC GTGTCGATCT TCGCGCGCAG CGTCGGCCTG
GCCGTCGACG TGCTTCTTGC GGCCGCCGGG CCTGACGCGC GCGACCCTTA CTCGCGGGCA
CTTGCGCTGC GCAGCCATCC GTTTCCGCCG GCCTTCCGTT TCGGCGTGCC CGACACGCTG
AGCTTCTTCG GCGATGCCGC GGCCGAGCAA GCTTTTCGCG ATGCGCAGCT GCGGCTCGCC
GAACTCGGCG GCACGGCCGT GGAAATTCCC TACGCGCCGC TGGCCGAGGC CGCCGCGCTG
CTCTACGAAA GCGCGCTCGT GGCCGAGCGC TATGCGGCGG TGCGCGGGTT CTTCGATGCG
CGCGGCTCCC AGGTGATCGA GCCGGTGCGC GGCATCCTCG AAAGCGGCCG CGGCTACAGC
GCCGCCGATG TGTTCGAGGC GCAGACCCGG CTGCGTGCCA TTGCGCAGCA GGTCGAGCCG
ATGTGGCGCG GCATCGACCT GCTGCTGGTG CCGACCGCGC CCACGCACTA CACGCGCGAG
CAGATGCGCG CCGATCCCGT GGTGCTCAAC CGCAATCTCG GCGCGTACAC CAACTTCGTC
AACCTGCTGG ACTACGCCGC CATCTCGGTG CCGAGCGCGC TGCGCGCCGA CGGCCTGCCC
TTCGGCATCA CGCTGATCGG CCCGTGCGGC AGCGATCTTG CGCTGGCCGA GTTGGGCCAG
CGCTATCACC ACGCCACCGG CCTGCCGCAG GGCGCCACGG GCTTGCCGCT GCCCGAGCCG
CGCCCCATTC CGGGCCTGGG CGCTTCGCCG GTGCAGGCCA TGCCCATCGC CGTCGTCGGC
GCGCACCTCT CGGGCATGCC GCTCAATGGC CAGCTCACCG AACGCGGCGC CACGCTGCTG
CGTGCCACCA CCACCTCGCC GCACTACCGC CTGCACGCCT TGCCGGGCAC CGTGCCGCCC
AAGCCGGGGC TGCAGCGCAG CACGGCCGGC GGAGCCGCTA TTGCGCTCGA AGTGTGGTCC
GTTCCCGTGG CCGAGATCGG CAGCTTCCTC GCGCTGATCC CGCCCCCGCT GGGCCTGGGC
AGCGTGGAGC TCGCCGACGG CAGCTGGGTG CACGGCTTCA TCTGCGAAGG CCATGCGCTC
GCAGGCGCCG AAGACGTGAG CCACCACGGC GGCTGGCGTG CCTACATCGC GAGCCGCGCC
GCGGCCTCTT CCCAAGCCAT TCCAACCTGA
 
Protein sequence
MMVHEENGSA AAAWIARFPR PVPGADAGPL AGLRFAVKDN IDVAGVPTTA ACPAFDRRPA 
EHSAVVRKLL DAGASLLGKT NLDQFACGLN GTRSPYGEVP NAFDARYVSG GSSSGSAYVV
AAGEADFALG TDTAGSGRVP AGLNNIVGLK PSRGLLSAFG VVPAAQSADC VSIFARSVGL
AVDVLLAAAG PDARDPYSRA LALRSHPFPP AFRFGVPDTL SFFGDAAAEQ AFRDAQLRLA
ELGGTAVEIP YAPLAEAAAL LYESALVAER YAAVRGFFDA RGSQVIEPVR GILESGRGYS
AADVFEAQTR LRAIAQQVEP MWRGIDLLLV PTAPTHYTRE QMRADPVVLN RNLGAYTNFV
NLLDYAAISV PSALRADGLP FGITLIGPCG SDLALAELGQ RYHHATGLPQ GATGLPLPEP
RPIPGLGASP VQAMPIAVVG AHLSGMPLNG QLTERGATLL RATTTSPHYR LHALPGTVPP
KPGLQRSTAG GAAIALEVWS VPVAEIGSFL ALIPPPLGLG SVELADGSWV HGFICEGHAL
AGAEDVSHHG GWRAYIASRA AASSQAIPT