Gene Vapar_0264 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagVapar_0264 
Symbol 
ID7972613 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameVariovorax paradoxus S110 
KingdomBacteria 
Replicon accessionNC_012791 
Strand
Start bp284835 
End bp285701 
Gene Length867 bp 
Protein Length288 aa 
Translation table11 
GC content70% 
IMG OID644790867 
Productpeptidase M48 Ste24p 
Protein accessionYP_002942193 
Protein GI239813283 
COG category[R] General function prediction only 
COG ID[COG4783] Putative Zn-dependent protease, contains TPR repeats 
TIGRFAM ID[TIGR01409] Tat (twin-arginine translocation) pathway signal sequence 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value0.197309 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGTGCACAC GATGCGAGCT TCTTGCTGTT TCTTCCGCGG CTTCCTCGGC GCCGCGCGCC 
TCGGCCTGGC AGCCGCGGCG GGCCTTCCTG CTGGCGGCCG GCGCCGCGCT GGCCGGACCG
GCCCTGGCGC AGGTTAACGT GGGCAATGCC TCGGTGGCGC GCAACCTGGT GCCGGCCGAC
CGGATCGAAG CCGCCGGCGT GCAGCAGTAC GGCCAGCTGC TCGAGCAGGC GCGCGCCAAG
CGTGCGCTCG CGGGCGACGG CAATGCGCAG CTGCAGCGGC TGCGCACCAT CGCGAACCGG
CTGATTCCTT TTGCGACGCC GTGGAACGCG CGCGCGCGTG AATGGAAGTG GGAGGTCAAC
CTGATCGGCA GCAAGCAGAT CAACGCCTTC TGCATGCCCG GCGGCAAGAT CGCCTTCTTC
ACCGGCATCC TCGAACAGCT CAAGCTCAGC GACGACGAGG TCGCCATGGT GATGGGCCAT
GAGATGGCCC ACGCGCTGCG CGAGCATGCG CGTGCCCGCA TGGCCAAGAG CGCGGGCACC
GGCGCGGCGC TTTCCATCGG CGCGCAGCTG CTGGGCCTGG GCCAGATGGG CGATCTGGCG
GCGCGCGCCG GCACGCAGCT GCTGACGCTC AAGTTCAGCC GCAGCGACGA GACCGAGGCC
GATCTCGTCG GGCTCGAACT CGCGGCGCGC GCGGGCTACG ACCCGCAGGC CTCGGTGTCG
CTCTGGAAGA AGATGGCCGC GGCATCGAAG AACCAGGGCG GCCTCGGCTT TCTGTCGACC
CACCCGAGCG GGCCGGACCG GATCCAGAAG CTCGAGGCCA ACCTGCCGAA GGTCGAGGGG
CTTTACCGGG AAGCCAAGCG TAGCTGA
 
Protein sequence
MCTRCELLAV SSAASSAPRA SAWQPRRAFL LAAGAALAGP ALAQVNVGNA SVARNLVPAD 
RIEAAGVQQY GQLLEQARAK RALAGDGNAQ LQRLRTIANR LIPFATPWNA RAREWKWEVN
LIGSKQINAF CMPGGKIAFF TGILEQLKLS DDEVAMVMGH EMAHALREHA RARMAKSAGT
GAALSIGAQL LGLGQMGDLA ARAGTQLLTL KFSRSDETEA DLVGLELAAR AGYDPQASVS
LWKKMAAASK NQGGLGFLST HPSGPDRIQK LEANLPKVEG LYREAKRS