| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Vapar_0257 |
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| Symbol | |
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| ID | 7972606 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Variovorax paradoxus S110 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_012791 |
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| Strand | - |
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| Start bp | 276055 |
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| End bp | 277314 |
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| Gene Length | 1260 bp |
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| Protein Length | 419 aa |
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| Translation table | 11 |
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| GC content | 70% |
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| IMG OID | 644790860 |
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| Product | O-antigen polymerase |
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| Protein accession | YP_002942186 |
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| Protein GI | 239813276 |
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| COG category | [M] Cell wall/membrane/envelope biogenesis |
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| COG ID | [COG3307] Lipid A core - O-antigen ligase and related enzymes |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 14 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGCAGAGAT CGCACATCGT CAGGCCCGCG GCCATGTTCT GGGGGTTGGT GGTGTTCATG
CCCGTCGGCC TCACCTACCT TTCGGCCCTG CTGCTGCTCG CCACCATGCT CTTGGCCGGC
GGGCTGCGCG AGCGCTCCGC GCGGCTGCGC GCCAACCCGC TGTGGTGGCC GCTGGTGGCG
TACCTGGCCT GGACCTTCAT CGTGCTGGCC ATCGGGCCGC ACTACCCCGA GACCGGCTCG
AACCTGTTCC ACGGCCTGCG CATCGGCCTC ACCATCCTGA TGGCGATGGC GCTCACGCGC
GAGGAAGCGG TCTGGGCGCT GCGCGGCTTC CTGCTGATCG CGGCGCTGAA CATCCTGCTG
GTCGTGGCCT ACTACGCCAT CGGCTTTCCG ATCTGGTCGC CGCTGCGCGC GGTGGTCATG
GAAGTGGGCA ACAAGTCGAT CAGCAATGCG CTGCTGTTCA GCGTGGTGGC GTCCACGGCC
GCCGTGTGGG GCATTGCGCA GATCGCCGCG CACCGGCCGC TGCGCGCCAT TCCGGCTTTC
GTGCTGATGC TGGGCCTGGG GCTGGTGGTG GCGCTGCCGC TGACCTCGCG CACCTCGGTG
CTCGCGCTGC TGCTGGTGAT CCCGGTGGTC TGCATCCACC AGTGGCGCAG CCACCTGAAG
ATGCTGGTGA GCGCGCTGGT GCTGGGCGCC GTGGTGCTGG CGGCCGCGCT CTACCAGCTG
CCGCAGCTGC AGCACAAGGT CGAGACCGGC GTGGAGGAAA TCGAGAAGGC GCAGGCCGGC
GAAATCTTCA AGGGCAGCTG GGTCATCCGC TACTACATGT ACCGCGACAC CGGCCTCATG
ATCGCCGACC GGCCGCTCAC GGGCTGGGGC ATCGGCGGCT GGACCGACCA GTGGCACAAG
CGCGGGCCGG CCCTCTTCGC CGACTCGAAC ATGCCGCACA ACGACTTCCT CTGGGTCGGC
GCGCAGGGCG GGCTGCCGGC CTTGCTGAGC CTGCTGGCCA TCATGGCGGG CGCCGTCTGG
CAGGCGTGGA AGCGGCCCGA CATCGCGGGC CGCTATGCGC TGGCGGCCAC GCTGATCGCG
CTGATTGCGT CGAGCGTGAA CTCGGCCGTG CGCGACGCGC AGATCGGCCT GGCGCTGCTG
TGGATCGCGA TGGTCTACCT GCGGCTCGCG CAGGAACCGC GGGAGACGCA GCCCTGGCAG
GGCCTGTGGC CGACGCGCCG CATCGCGGCG GCGCTCGAGG TCCCGCCGCA ATCCCGATAG
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| Protein sequence | MQRSHIVRPA AMFWGLVVFM PVGLTYLSAL LLLATMLLAG GLRERSARLR ANPLWWPLVA
YLAWTFIVLA IGPHYPETGS NLFHGLRIGL TILMAMALTR EEAVWALRGF LLIAALNILL
VVAYYAIGFP IWSPLRAVVM EVGNKSISNA LLFSVVASTA AVWGIAQIAA HRPLRAIPAF
VLMLGLGLVV ALPLTSRTSV LALLLVIPVV CIHQWRSHLK MLVSALVLGA VVLAAALYQL
PQLQHKVETG VEEIEKAQAG EIFKGSWVIR YYMYRDTGLM IADRPLTGWG IGGWTDQWHK
RGPALFADSN MPHNDFLWVG AQGGLPALLS LLAIMAGAVW QAWKRPDIAG RYALAATLIA
LIASSVNSAV RDAQIGLALL WIAMVYLRLA QEPRETQPWQ GLWPTRRIAA ALEVPPQSR
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