Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Vapar_0254 |
Symbol | |
ID | 7972603 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Variovorax paradoxus S110 |
Kingdom | Bacteria |
Replicon accession | NC_012791 |
Strand | + |
Start bp | 274470 |
End bp | 275423 |
Gene Length | 954 bp |
Protein Length | 317 aa |
Translation table | 11 |
GC content | 65% |
IMG OID | 644790857 |
Product | branched-chain amino acid aminotransferase |
Protein accession | YP_002942183 |
Protein GI | 239813273 |
COG category | [E] Amino acid transport and metabolism [H] Coenzyme transport and metabolism |
COG ID | [COG0115] Branched-chain amino acid aminotransferase/4-amino-4-deoxychorismate lyase |
TIGRFAM ID | [TIGR01122] branched-chain amino acid aminotransferase, group I |
|
|
Plasmid Coverage information |
Num covering plasmid clones | 13 |
Plasmid unclonability p-value | 0.925789 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
| |
Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
| |
Sequence |
Gene sequence | ATGAGCTCGA TCCCCCCCTC GCTGGACGAC CGTGACGGCA AGATCTGGAT GGACGGCGAA CTCGTGGACT GGCGCGACGC CAAGATCCAC GTGCTGAGCC ACACGCTGCA CTACGGCTGC GGCGCCTTCG AGGGCGTGCG CGCCTACAAG ACGGCCGACG GCAGCACCGC CATCTTCCGC CTGGCCGAGC ACACCGAGCG CCTGTTCAAC AGCGCCAAGA TCCTGCGCAT GAAGATTCCC TTCACGCAGG AGCAGCTCAA CGAGGCCCAG AAGCAGGTCG TGCGCGAGAA CAAGCTCGAA AGCTGCTACC TGCGCCCGCT GATCTGGATC GGCTCCGAAA AGCTCGGCGT GAGCCCCAAG GGCAACCGGA TCCACGCCAT GGTCGCGGCC TGGTCCTGGG GCGCCTACCT GGGCGAAGAG GGCATGAAGC GCGGCATCCG CGTGAAGACC TCCAGCTTCA CCCGCCACCA CGTCAACATC ACGATGACGC AGGCCAAGAC GGTGAGCAAC TACACCAACT CGATCCTCGC CAACATGGAA GCGCTGGACG ACGGCTACGA CGAAGCGCTG CTGCTCGACG CGAGCGGCTT CGTCTCCGAA GGCGCGGGCG AGAACATCTT CGTGGTCAAG GGCGGCGTGG TCTACACGCC CGACCTCTCG GCCGGCGCGC TCAACGGCAT CACGCGCAAC ACCATCCTGC ACGTGTGCAA GGACCTGGGG CTCGAACTGG TGCAAAAGCG CATCACGCGC GACGAGGTCT ACATTGCCGA CGAGGCCTTC TTCACCGGCA CCGCCGCTGA AGTGACGCCC ATCCGCGAGC TCGACCGCAT CGAGATCGGC AACCGCGGCG ACGGCGGCTC GCGCGGCCCC ATCACCGAAA AGATCCAGGC TGCCTTCTTC GACATCGTGA ACGGCAAGAA CCCCAAATAC GCCCACTGGC TCACGAAAGT CTGA
|
Protein sequence | MSSIPPSLDD RDGKIWMDGE LVDWRDAKIH VLSHTLHYGC GAFEGVRAYK TADGSTAIFR LAEHTERLFN SAKILRMKIP FTQEQLNEAQ KQVVRENKLE SCYLRPLIWI GSEKLGVSPK GNRIHAMVAA WSWGAYLGEE GMKRGIRVKT SSFTRHHVNI TMTQAKTVSN YTNSILANME ALDDGYDEAL LLDASGFVSE GAGENIFVVK GGVVYTPDLS AGALNGITRN TILHVCKDLG LELVQKRITR DEVYIADEAF FTGTAAEVTP IRELDRIEIG NRGDGGSRGP ITEKIQAAFF DIVNGKNPKY AHWLTKV
|
| |