Gene Vapar_0254 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagVapar_0254 
Symbol 
ID7972603 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameVariovorax paradoxus S110 
KingdomBacteria 
Replicon accessionNC_012791 
Strand+ 
Start bp274470 
End bp275423 
Gene Length954 bp 
Protein Length317 aa 
Translation table11 
GC content65% 
IMG OID644790857 
Productbranched-chain amino acid aminotransferase 
Protein accessionYP_002942183 
Protein GI239813273 
COG category[E] Amino acid transport and metabolism
[H] Coenzyme transport and metabolism 
COG ID[COG0115] Branched-chain amino acid aminotransferase/4-amino-4-deoxychorismate lyase 
TIGRFAM ID[TIGR01122] branched-chain amino acid aminotransferase, group I 


Plasmid Coverage information

Num covering plasmid clones13 
Plasmid unclonability p-value0.925789 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGAGCTCGA TCCCCCCCTC GCTGGACGAC CGTGACGGCA AGATCTGGAT GGACGGCGAA 
CTCGTGGACT GGCGCGACGC CAAGATCCAC GTGCTGAGCC ACACGCTGCA CTACGGCTGC 
GGCGCCTTCG AGGGCGTGCG CGCCTACAAG ACGGCCGACG GCAGCACCGC CATCTTCCGC 
CTGGCCGAGC ACACCGAGCG CCTGTTCAAC AGCGCCAAGA TCCTGCGCAT GAAGATTCCC 
TTCACGCAGG AGCAGCTCAA CGAGGCCCAG AAGCAGGTCG TGCGCGAGAA CAAGCTCGAA 
AGCTGCTACC TGCGCCCGCT GATCTGGATC GGCTCCGAAA AGCTCGGCGT GAGCCCCAAG 
GGCAACCGGA TCCACGCCAT GGTCGCGGCC TGGTCCTGGG GCGCCTACCT GGGCGAAGAG 
GGCATGAAGC GCGGCATCCG CGTGAAGACC TCCAGCTTCA CCCGCCACCA CGTCAACATC 
ACGATGACGC AGGCCAAGAC GGTGAGCAAC TACACCAACT CGATCCTCGC CAACATGGAA 
GCGCTGGACG ACGGCTACGA CGAAGCGCTG CTGCTCGACG CGAGCGGCTT CGTCTCCGAA 
GGCGCGGGCG AGAACATCTT CGTGGTCAAG GGCGGCGTGG TCTACACGCC CGACCTCTCG 
GCCGGCGCGC TCAACGGCAT CACGCGCAAC ACCATCCTGC ACGTGTGCAA GGACCTGGGG 
CTCGAACTGG TGCAAAAGCG CATCACGCGC GACGAGGTCT ACATTGCCGA CGAGGCCTTC 
TTCACCGGCA CCGCCGCTGA AGTGACGCCC ATCCGCGAGC TCGACCGCAT CGAGATCGGC 
AACCGCGGCG ACGGCGGCTC GCGCGGCCCC ATCACCGAAA AGATCCAGGC TGCCTTCTTC 
GACATCGTGA ACGGCAAGAA CCCCAAATAC GCCCACTGGC TCACGAAAGT CTGA
 
Protein sequence
MSSIPPSLDD RDGKIWMDGE LVDWRDAKIH VLSHTLHYGC GAFEGVRAYK TADGSTAIFR 
LAEHTERLFN SAKILRMKIP FTQEQLNEAQ KQVVRENKLE SCYLRPLIWI GSEKLGVSPK 
GNRIHAMVAA WSWGAYLGEE GMKRGIRVKT SSFTRHHVNI TMTQAKTVSN YTNSILANME 
ALDDGYDEAL LLDASGFVSE GAGENIFVVK GGVVYTPDLS AGALNGITRN TILHVCKDLG 
LELVQKRITR DEVYIADEAF FTGTAAEVTP IRELDRIEIG NRGDGGSRGP ITEKIQAAFF 
DIVNGKNPKY AHWLTKV