| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Vapar_0250 |
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| Symbol | |
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| ID | 7972599 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Variovorax paradoxus S110 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_012791 |
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| Strand | - |
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| Start bp | 268770 |
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| End bp | 271154 |
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| Gene Length | 2385 bp |
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| Protein Length | 794 aa |
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| Translation table | 11 |
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| GC content | 69% |
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| IMG OID | 644790853 |
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| Product | type VI secretion system Vgr family protein |
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| Protein accession | YP_002942179 |
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| Protein GI | 239813269 |
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| COG category | [S] Function unknown |
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| COG ID | [COG3501] Uncharacterized protein conserved in bacteria |
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| TIGRFAM ID | [TIGR01646] Rhs element Vgr protein
[TIGR03361] type VI secretion system Vgr family protein |
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Plasmid Coverage information |
| Num covering plasmid clones | 11 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGTCCGCCT TCAACCGCGG CCGCAAGCTC GCCGCAACTT CCAGCGCCAT GCCCACGCTC
GCAGGCATGG ACGCACTCGA ACCGATGCGG GTGGAGGGGG AGGAATCCCT CAGCCGCCCC
TACAGCTACA CCATCACGCT GACCACGCCG GAGTCGCCGG ACATCGATGC GCGCTCGGCG
GCGAACGTCA AGCTCAAGCC CCTGATCGGC GAGGAGTTCA GCGTGCACAT CCTGCTCGAC
GGGCGCCCCG GCGGCGCGGG GCAGGAGCGC CACATTTCCG GCCTGGTGAC GCGCGCCCGC
TTCCTGCGCC TGGAGAACAG GCGGGCGCTC TACGAAGTGG TCATCGAGCC CTGGCTGAGC
CTGGCGCAGC GAACGCGCGA CTACAGGATC TTCCAGAAAA ACAGCGTGCT CGACACGGTG
GGCGAGGTGC TCGGCGCGTA CGGCTTTGCG CTTTCCGTCC GAGCCACGGG CAGCTATCCC
GCGCGCGAGT TCGTGGTGCA GTATGGCGAG ACGGACTACG ACTTCGCGAG CCGCCTGCTG
CACGAGTGGG GCCTGTACTA CTACTTCGAG CACGGCGAGG CCGGCCACAC GATGGTGATC
GTCGACGACA TGCAGTCGCA CCGGCCCTTT CCGGCCGGCG GCTACGAGCA GGTTCCCTTC
GGCGCCATGC AGGCATCGTC CAACGAGGAG CATTGCCACC GCTTCCGGCT GTCCGAAGGC
CTGCAAAGCG GAAAGTGGGT CACCGGCGAC TTCGACTTCA CGCGGCCCAA GGCAGACCTC
ACGCAGGCCC GCGCGATGCC GCGGCGCACG CAGCACAGCA CGCGGGAGGT GTTCGCGTGG
CCCGGCAACT ACGCCGTGGA ATCCGAGGGC GAGCAGCTCG CGCGTGCGCG CATGGAAGAA
GCCGGTGCGC CGGGGCAGGT GGCCAGCGGC GCGGGCAACC TGCGCGGCGT GGCGGCCGGC
CATCGCTTCA CGCTGGCCGG CCATCCGCAG GACGGCGCGA ACGCCGACTA CCTCGTCACC
GCGGCACGCC TGTTGCTGCA GGAAGCGGGC GACGCCACGG GGCAGGAAGA GTTCCAGTGC
AACGTCGAGT TCGAGGTCAT CCCGGCAAGC AACATCTTCC GCCCGACCCC GGATGCGGCC
AAGCCGCGCA CCGCCGGCCC GCAGACCGCG GTGGTCACCG GCCCCGCGGG CCGCGAGATC
TGGACCGACC AGTACGGGCG CGTGAAGCTC AGCTTTCACT GGAACCGCTA CTGCACCCGG
GACGAAAGCA GCTCATGCTG GGTGCGGGTG TCCTCGCCGT GGGCCGGCAC CAACTTCGGG
GGCATGCAGA TTCCGCGCAT CGGGCAGGAG GTGGTGGTCG ACTTCGAGTA CGGCGACCCC
GACCGGCCGA TCATCACCGG CCGCGTCTAC AACGCGGACA ACATGCCGCC GTGGGAGCTG
CCGGCCAACG CCACGCAGAG CGGCCTGCTG TCGCGCAGTT CCGAAGGCGG CACCAGCGAG
AACGCGAACG CCCTTCGCTT CGAGGACAAG AAGGGCGAAG AGCAGCTCTG GCTGCATGCG
GAGAAGGACC AGCTGATCGA GGTCGAGAAC GACGAGGTGC ACACGGTGGG CCGCGACCGC
ACCAAGACCG TCGACCACGA CGAGACCAGT CGCATCAAGA ACGACCGCAC GGAAACGGTG
GACCGCAACG AGACGATCAC GGTCCATGGC CAGCGCGCCG AGACGGTGGA CGGCAACGAG
ACGGTCACCG TCAAGTCCAA CCGCAGCCAC TCGGTCACCG GCACCGAGAC CCTCACGGTC
ACCGGCGACC AGACCCACAC CGCCAAGGCC AACCGCACCG CCAGCGTCAC CGGCAACCAG
AGCACCTCGG TCACAGGCGC CGATTCGCTC GCGGTGACGC AGGCCCGCAG CGTCACGGTC
CAGGACAGCG ACACCTGGAA CGTCGCCCTC GGCCAGACCA CCACCATCGG GCAGGCCTAC
CAGGTCTGCG CCAAGTCGCA CACCGGCACC TACAACGACG CGATGACGCT GAACGTGCCG
GCCGGCCCGG CCTCGGCCAC TTCGCAGGGC GACTTCTCCC TGACCAGTTC GGCCGCCAAC
ATCTATGGAA CGGCCGCCCT CAACGTGGGC CTGTTCGCGC AGGGCGGGGA CTTTTCCGCC
GTGGCCTCGA CCAATGTCGG CGTGAGCGCC GAGGGCGGCA CGCTGGACAC CTACTCGTCC
GGCGCCATGA CGCATGCAAG CCCGACCAGC GTGGTGCTCA ATGTCGAGGG CACGACGGTG
GAGGTCACGC CGGGGCGCAT CGTGCTGCGC GCCGGCAGCG CGAACCTGAT GCTGGACGAC
GCGGGCGTCA CGGTCAACGG CACCAAGATC TTCCTGAACT GCTGA
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| Protein sequence | MSAFNRGRKL AATSSAMPTL AGMDALEPMR VEGEESLSRP YSYTITLTTP ESPDIDARSA
ANVKLKPLIG EEFSVHILLD GRPGGAGQER HISGLVTRAR FLRLENRRAL YEVVIEPWLS
LAQRTRDYRI FQKNSVLDTV GEVLGAYGFA LSVRATGSYP AREFVVQYGE TDYDFASRLL
HEWGLYYYFE HGEAGHTMVI VDDMQSHRPF PAGGYEQVPF GAMQASSNEE HCHRFRLSEG
LQSGKWVTGD FDFTRPKADL TQARAMPRRT QHSTREVFAW PGNYAVESEG EQLARARMEE
AGAPGQVASG AGNLRGVAAG HRFTLAGHPQ DGANADYLVT AARLLLQEAG DATGQEEFQC
NVEFEVIPAS NIFRPTPDAA KPRTAGPQTA VVTGPAGREI WTDQYGRVKL SFHWNRYCTR
DESSSCWVRV SSPWAGTNFG GMQIPRIGQE VVVDFEYGDP DRPIITGRVY NADNMPPWEL
PANATQSGLL SRSSEGGTSE NANALRFEDK KGEEQLWLHA EKDQLIEVEN DEVHTVGRDR
TKTVDHDETS RIKNDRTETV DRNETITVHG QRAETVDGNE TVTVKSNRSH SVTGTETLTV
TGDQTHTAKA NRTASVTGNQ STSVTGADSL AVTQARSVTV QDSDTWNVAL GQTTTIGQAY
QVCAKSHTGT YNDAMTLNVP AGPASATSQG DFSLTSSAAN IYGTAALNVG LFAQGGDFSA
VASTNVGVSA EGGTLDTYSS GAMTHASPTS VVLNVEGTTV EVTPGRIVLR AGSANLMLDD
AGVTVNGTKI FLNC
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