Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Vapar_0250 |
Symbol | |
ID | 7972599 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Variovorax paradoxus S110 |
Kingdom | Bacteria |
Replicon accession | NC_012791 |
Strand | - |
Start bp | 268770 |
End bp | 271154 |
Gene Length | 2385 bp |
Protein Length | 794 aa |
Translation table | 11 |
GC content | 69% |
IMG OID | 644790853 |
Product | type VI secretion system Vgr family protein |
Protein accession | YP_002942179 |
Protein GI | 239813269 |
COG category | [S] Function unknown |
COG ID | [COG3501] Uncharacterized protein conserved in bacteria |
TIGRFAM ID | [TIGR01646] Rhs element Vgr protein [TIGR03361] type VI secretion system Vgr family protein |
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Plasmid Coverage information |
Num covering plasmid clones | 11 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGTCCGCCT TCAACCGCGG CCGCAAGCTC GCCGCAACTT CCAGCGCCAT GCCCACGCTC GCAGGCATGG ACGCACTCGA ACCGATGCGG GTGGAGGGGG AGGAATCCCT CAGCCGCCCC TACAGCTACA CCATCACGCT GACCACGCCG GAGTCGCCGG ACATCGATGC GCGCTCGGCG GCGAACGTCA AGCTCAAGCC CCTGATCGGC GAGGAGTTCA GCGTGCACAT CCTGCTCGAC GGGCGCCCCG GCGGCGCGGG GCAGGAGCGC CACATTTCCG GCCTGGTGAC GCGCGCCCGC TTCCTGCGCC TGGAGAACAG GCGGGCGCTC TACGAAGTGG TCATCGAGCC CTGGCTGAGC CTGGCGCAGC GAACGCGCGA CTACAGGATC TTCCAGAAAA ACAGCGTGCT CGACACGGTG GGCGAGGTGC TCGGCGCGTA CGGCTTTGCG CTTTCCGTCC GAGCCACGGG CAGCTATCCC GCGCGCGAGT TCGTGGTGCA GTATGGCGAG ACGGACTACG ACTTCGCGAG CCGCCTGCTG CACGAGTGGG GCCTGTACTA CTACTTCGAG CACGGCGAGG CCGGCCACAC GATGGTGATC GTCGACGACA TGCAGTCGCA CCGGCCCTTT CCGGCCGGCG GCTACGAGCA GGTTCCCTTC GGCGCCATGC AGGCATCGTC CAACGAGGAG CATTGCCACC GCTTCCGGCT GTCCGAAGGC CTGCAAAGCG GAAAGTGGGT CACCGGCGAC TTCGACTTCA CGCGGCCCAA GGCAGACCTC ACGCAGGCCC GCGCGATGCC GCGGCGCACG CAGCACAGCA CGCGGGAGGT GTTCGCGTGG CCCGGCAACT ACGCCGTGGA ATCCGAGGGC GAGCAGCTCG CGCGTGCGCG CATGGAAGAA GCCGGTGCGC CGGGGCAGGT GGCCAGCGGC GCGGGCAACC TGCGCGGCGT GGCGGCCGGC CATCGCTTCA CGCTGGCCGG CCATCCGCAG GACGGCGCGA ACGCCGACTA CCTCGTCACC GCGGCACGCC TGTTGCTGCA GGAAGCGGGC GACGCCACGG GGCAGGAAGA GTTCCAGTGC AACGTCGAGT TCGAGGTCAT CCCGGCAAGC AACATCTTCC GCCCGACCCC GGATGCGGCC AAGCCGCGCA CCGCCGGCCC GCAGACCGCG GTGGTCACCG GCCCCGCGGG CCGCGAGATC TGGACCGACC AGTACGGGCG CGTGAAGCTC AGCTTTCACT GGAACCGCTA CTGCACCCGG GACGAAAGCA GCTCATGCTG GGTGCGGGTG TCCTCGCCGT GGGCCGGCAC CAACTTCGGG GGCATGCAGA TTCCGCGCAT CGGGCAGGAG GTGGTGGTCG ACTTCGAGTA CGGCGACCCC GACCGGCCGA TCATCACCGG CCGCGTCTAC AACGCGGACA ACATGCCGCC GTGGGAGCTG CCGGCCAACG CCACGCAGAG CGGCCTGCTG TCGCGCAGTT CCGAAGGCGG CACCAGCGAG AACGCGAACG CCCTTCGCTT CGAGGACAAG AAGGGCGAAG AGCAGCTCTG GCTGCATGCG GAGAAGGACC AGCTGATCGA GGTCGAGAAC GACGAGGTGC ACACGGTGGG CCGCGACCGC ACCAAGACCG TCGACCACGA CGAGACCAGT CGCATCAAGA ACGACCGCAC GGAAACGGTG GACCGCAACG AGACGATCAC GGTCCATGGC CAGCGCGCCG AGACGGTGGA CGGCAACGAG ACGGTCACCG TCAAGTCCAA CCGCAGCCAC TCGGTCACCG GCACCGAGAC CCTCACGGTC ACCGGCGACC AGACCCACAC CGCCAAGGCC AACCGCACCG CCAGCGTCAC CGGCAACCAG AGCACCTCGG TCACAGGCGC CGATTCGCTC GCGGTGACGC AGGCCCGCAG CGTCACGGTC CAGGACAGCG ACACCTGGAA CGTCGCCCTC GGCCAGACCA CCACCATCGG GCAGGCCTAC CAGGTCTGCG CCAAGTCGCA CACCGGCACC TACAACGACG CGATGACGCT GAACGTGCCG GCCGGCCCGG CCTCGGCCAC TTCGCAGGGC GACTTCTCCC TGACCAGTTC GGCCGCCAAC ATCTATGGAA CGGCCGCCCT CAACGTGGGC CTGTTCGCGC AGGGCGGGGA CTTTTCCGCC GTGGCCTCGA CCAATGTCGG CGTGAGCGCC GAGGGCGGCA CGCTGGACAC CTACTCGTCC GGCGCCATGA CGCATGCAAG CCCGACCAGC GTGGTGCTCA ATGTCGAGGG CACGACGGTG GAGGTCACGC CGGGGCGCAT CGTGCTGCGC GCCGGCAGCG CGAACCTGAT GCTGGACGAC GCGGGCGTCA CGGTCAACGG CACCAAGATC TTCCTGAACT GCTGA
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Protein sequence | MSAFNRGRKL AATSSAMPTL AGMDALEPMR VEGEESLSRP YSYTITLTTP ESPDIDARSA ANVKLKPLIG EEFSVHILLD GRPGGAGQER HISGLVTRAR FLRLENRRAL YEVVIEPWLS LAQRTRDYRI FQKNSVLDTV GEVLGAYGFA LSVRATGSYP AREFVVQYGE TDYDFASRLL HEWGLYYYFE HGEAGHTMVI VDDMQSHRPF PAGGYEQVPF GAMQASSNEE HCHRFRLSEG LQSGKWVTGD FDFTRPKADL TQARAMPRRT QHSTREVFAW PGNYAVESEG EQLARARMEE AGAPGQVASG AGNLRGVAAG HRFTLAGHPQ DGANADYLVT AARLLLQEAG DATGQEEFQC NVEFEVIPAS NIFRPTPDAA KPRTAGPQTA VVTGPAGREI WTDQYGRVKL SFHWNRYCTR DESSSCWVRV SSPWAGTNFG GMQIPRIGQE VVVDFEYGDP DRPIITGRVY NADNMPPWEL PANATQSGLL SRSSEGGTSE NANALRFEDK KGEEQLWLHA EKDQLIEVEN DEVHTVGRDR TKTVDHDETS RIKNDRTETV DRNETITVHG QRAETVDGNE TVTVKSNRSH SVTGTETLTV TGDQTHTAKA NRTASVTGNQ STSVTGADSL AVTQARSVTV QDSDTWNVAL GQTTTIGQAY QVCAKSHTGT YNDAMTLNVP AGPASATSQG DFSLTSSAAN IYGTAALNVG LFAQGGDFSA VASTNVGVSA EGGTLDTYSS GAMTHASPTS VVLNVEGTTV EVTPGRIVLR AGSANLMLDD AGVTVNGTKI FLNC
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