| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Vapar_0248 |
|---|
| Symbol | |
|---|
| ID | 7972597 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Variovorax paradoxus S110 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_012791 |
|---|
| Strand | - |
|---|
| Start bp | 262832 |
|---|
| End bp | 267136 |
|---|
| Gene Length | 4305 bp |
|---|
| Protein Length | 1434 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 67% |
|---|
| IMG OID | 644790851 |
|---|
| Product | YD repeat protein |
|---|
| Protein accession | YP_002942177 |
|---|
| Protein GI | 239813267 |
|---|
| COG category | [M] Cell wall/membrane/envelope biogenesis |
|---|
| COG ID | [COG3209] Rhs family protein |
|---|
| TIGRFAM ID | [TIGR01643] YD repeat (two copies) |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 4 |
|---|
| Plasmid unclonability p-value | 0.116954 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | TTGTTCTTCG CGGCCAAGCA CTTCGACCCC CAGCTGGGCA TCGACGCCCA CACCTACCTG
GCGCCGCCCG GCGTATGGCC CACGCTGCAC ATCGGCATCG TGATGGACCC GTTCGACTAC
CTGCCGACCA TCCAGGTCTC GCCCGACAAC CCGATCGTGA AGGGCATGGC AGCCGTGGAC
GGTGCCATGC AGGCGGGCCT GGACACCATC GGCCAAGGCA CCGCAGCGCC CGAGGTGCCG
GCACCGCCGG GCGCGCCGGC CGGCGGCGGC GAGATGCCCG CGAGCATTCC CTTCCCGCTC
GGCGCCACCG TCGAGGTGGC GGGGGTGCGC CGGGCCAACG CCGGCACGGG CGGCGTGGAC
TTCCACGTCC TCGTCGGCGC CCCCATGCCG GTGATCAAGG CGCCCGGCGG CCCCCAGTTC
GAGGACGAGC TTTTCATGGG CAGCCGCATC GTGCTGGCCG ATGGCGAACC CTTCTCGCGC
ATCGGCGTGC CGGTGCTGGC CTGCAACATC GTGGGCCTGG TGCCGCCGTT CCGAAAGAAG
AAGGCAGTCA AGCCGCTGCG GCTGAGCCTG ATGCTGCCGA CCACCTTCAA CGTCGCCATC
CCGCCGCAGG TGTTCGTGGG CGGGCCGCCG ACCATCTCGT GGGGCGCGAT GGTCCAGCGC
GGGCTGTTCA AGGCGCTGGG CCGGGCCTAC ACCCGCATCG CGCGGCGCGT GTTCAAGAAC
ATGCCGCCGG GCTTCCTCAA GTGCCAGGTG CTGCGTGCCG AGCCGGTGGA CATCCGCGAT
GGCAGCGTCT CGGTGACGCA CGAGGACTTC AGCATTCCGG GCCGGCTTCC GCTGAGCTGG
ACGCGCGTCT ATGCATCGCG CGACCACGCC CTGCCCGGCC ATTGCGGCCA CGGCTGGCAG
ACCCCGGCGG ATGTGCGCCT GATGGCGGAA GCCGACGGCC TGCTCAGCCT GCAGGGGCCG
GAAGAATTCG CGCTGTTCCC TGCGCTGCCG CAGGCCGAAG GACAGCAGGT GCTCGACGTG
GTGGACGGTG CGCGGCTGAT GCGCCAGGGC ACGGCGCTCG TGGTGCGCTT CAAGAGCGGC
CTGCGCTACC ACTTCGAAGA TGCGCTGTCG CCCGAGGGAG CACTGCAGGC CGCGCCCCTG
CCCATCGCGC GCATCGAGGA TGCCTGCGGC AACCACTGGC GCTTCGTGCG GCGGGGCCGC
GACCTGGTGC GCATCGCCGA AAGCGGCGTG GACGGCCTGC CGGGCCGCAG CATCGAGGTG
CAGTCGCGCG GCGGGTACAT CGAGTCCATG GCGCTGCGCG ACCCGGCCAC CGGGCAGGAG
CATCCGCTGG TGCGCTACCG CCATGCCGAC GGCGACCTGC TGGCGGCGAG CGATGCGCTG
GGTGCGGCGC GCGAGTTTGC GTACCTGCAG CACCGCATGG CGCGCCACAC GGACCGCACG
GGCCTGTCGT TTCACTACGC GTACGACGAG CAGTGGCGCG TGGTGCACGC CTGGGGCGAC
GGCGGGCTGC ACGACTACCG CTTCGCCTAC AGCGCGGCGC TGCGGCAGAC CGAGGTGACC
AACTCGCTGG GGCACCTCAC GGTGGTCAAG TTCGACGAGG CGGGGCTGCC GTTGGCGGAG
ATCGATCCGC TGGATGGCGT GACCACCTTT GAGTATGACG ATGTGGGGCG GACGGTGGCG
GTGACTGCGC CCGGGGGGCT GCGCACAGGG TTCACCTACG ATGCGCGGGG CAATCTGTTG
GGCGTACGAC ATCCCGATGG CAGCATCGTA GGCTGCGAAT ACGACAGCGA TGACCAGTTG
CTCGCCGTCA TCGATCCGCT GGGTCATCGC TGGGAGCACG CCAGCGACGC ACGCGGGCTG
CCATCCAGCC AGACCGATCC GCTGGGCGCC GTCACCCGCT TCGAGCATGA CGACCGCGGC
CAGCTGGTGC GCCATGTCAA TGCGCGGGGT GCGGTCACGC AGCTGCGCTA TGACCGCTAT
GGGCTGCCCG CCCAGATGAT CGACGCCCTG ACCCATGTCA CCCGCTTCGA CTATGACGCA
CTCGGGCGGC TGCGCACGCA AGTCAACGCA CTGGGGCAAC GAAGCCGGTA TCACTGCGAC
GCGAAAGGCA GGCTGCAACG CATCACGCAG CACGACGGCG CCCAACTCAC CTGTGCGTAC
GACGCCGAGG ACCGGCTGGT GCGCTATGCC GACGAGAACG GTGCAATCAC CGAACTGACC
TACAGCGGCA CGGGACTGAT CGCCCGGCGA GTTCAACCCG ATGGTCATGC CGTGCGCTAC
GACTACGACA GTGAAGAGCA GCTCGTCGCT GTAGTCAACC CGCGCGGCGA ACGCCATGAA
CTCACACGCG ATCCCTTGGG CCGAATCGTC GAGGAGATCG ATTACTGGGG GCAATGCCGG
CGCTTCCACT ACGACGCCAG CGGACGGCTC CTGCGCAGCA TCGATCCAAT GGGCCGCACG
ATCAGCTTCC ATACTGACGC CATGGGTCGC ATCACGCATA AGACCTGGCC CGAAATCTCG
GGAGGCGCGC CGGCCGGTGC GGAAGATTTC AGGTACGACG CAGCGGGCCG GCTCGTCGAG
GCTCGCAACG CCCACAGCCA TTTCAAACAT CGCTTCGACG CGCTCGGTCA TCTGGTCGAG
GAACAGCAGG GCAGCTTCCG GATCGAACGC GCCTACGACG CGGCCGGAAA CTCCGTCGAG
CGCAAGACCA GCGCGGGCAA CCGGGTGGCC GTGCGCTACG ACCTGCTCAA TCGACCCGCA
GAGATCGCCA TCAACGATGA GCCCCCGATC ACCATCGAAC GCAACGCCTT GGGGCAAGCG
ACGGCGGAGC ATCTGAGCGA GCACGTGGTT CGCACGCTGC GCTACAACGA CCAGGGCTTG
GTCGCTGCAC AAGCCGTCGC AAAGGACGGC GCGCCACTAT TCGACACGCG CTTCGACTAC
GACGCCGCCG GCAATCTGAC GCGACGCACG GACAGCCAAC AAGGCAACGA CCTCTACACC
CACGATCCGA TGGGGCGCAT CCTGTCCCAC GTCGATCCCA TGGGTCGCGT CAGGCACTAC
CTGAGCGACC CTGCGGGCGA TCGGCTCAGG ACAAACGTGC GAATCGTCGC GATGGCGCAG
ACCGCAAGCG GCCAACAGCA ACCCGAGCAC TGGACACGTG AGGGTGAGCA CGAGGGATGG
CACTACGTGT TCGACCGCGC CGGCAACCTC ACAAGCCGCA CACAGACGCG CGCACCCAAC
CAGCCTGCCC TGCACCTGGC ATGGGATACC AATCAGCGGC TGACCCAGAG CCGATGGGAG
CGCGGCCCGC ACCATGGAGA AGTGACCACC TACGGTTATG ACCCCTTGGG CCGCCGCGTC
TTCAAACGCA ACACGACGCA TACGACCTGG TTCTTCTGGG ACGGGGATGC GCTGCTCGGT
GAGGCTTGCC AGGAAAACGC CCTGGTGCCG AAGACGAAAA AATCCCCGGT GACGAGCTTG
CTGGAACGAC GCAAGCAAGA GGACGCGCTC AGACAGCTGC ATGCGAAGAC GCGCGAATTC
GTCCTCAAGC CCGGCACCTT CGAGCCACTG GCGTTGATAG ACAAGGAGAT GCCGCCGTCC
AGCGTGGACA CCTCCGAGGA CACCGCACGG GTTCTTCACT ATCACAACGA TCCCGATGGC
CGTCCCTTGC GCATGACAAC CCGTGACGGC CAGATCGTGT GGGCCGTTCG CTACGACGTC
TGGGGCGGCA TCGCACGCAA GGATTGCGAA CTTCTTGCAC AGCCGATCAG ATGCCAGGGG
CAACAGGAAG ACGCCGAGAC GGGCCTCTTC TACAACAGGC ATCGGTACTT CGACCCCATC
ATCGGCGCCT ATGTTTCAGC AGATCCCATC GGGCTGCGGG GTGGCGTGAA TCCCTACGCC
TACGGCTGCA GCAATCCTTA CTTCTGGATC GATCCGCTGG GACTCGCAGC CAGTTGCGAA
AGGCATTTGA GGAGCATTGA CGAACAGCTT CAGCAGGGCC GGCGTGCGCG AATCGATGTG
GCGTCCAAGG ACGATGCGAT CGAGCTGCTC CTCGCCTACA CCACAGGACC GGCCGGCCGC
CGGGGCGCGT TCCGGAACAC CACGGATCAA CCACTGCCCG AAGGAAAGAA GTCCGAGTCG
GGCTCGGACT GGCTGCCGGG CGGACGCGGC GCCTATCAGC GCGAAGGCAC CTACCACTGG
GATGCAGCGG ACCCGAATGC CAAGGCAGGA GACCATGCCC TCGAAGGCAA TCACTTGCAG
ATTCACAACT TCGACGGGAA GATCATCCGG ATCTTTTTTC CCTGA
|
|---|
| Protein sequence | MFFAAKHFDP QLGIDAHTYL APPGVWPTLH IGIVMDPFDY LPTIQVSPDN PIVKGMAAVD
GAMQAGLDTI GQGTAAPEVP APPGAPAGGG EMPASIPFPL GATVEVAGVR RANAGTGGVD
FHVLVGAPMP VIKAPGGPQF EDELFMGSRI VLADGEPFSR IGVPVLACNI VGLVPPFRKK
KAVKPLRLSL MLPTTFNVAI PPQVFVGGPP TISWGAMVQR GLFKALGRAY TRIARRVFKN
MPPGFLKCQV LRAEPVDIRD GSVSVTHEDF SIPGRLPLSW TRVYASRDHA LPGHCGHGWQ
TPADVRLMAE ADGLLSLQGP EEFALFPALP QAEGQQVLDV VDGARLMRQG TALVVRFKSG
LRYHFEDALS PEGALQAAPL PIARIEDACG NHWRFVRRGR DLVRIAESGV DGLPGRSIEV
QSRGGYIESM ALRDPATGQE HPLVRYRHAD GDLLAASDAL GAAREFAYLQ HRMARHTDRT
GLSFHYAYDE QWRVVHAWGD GGLHDYRFAY SAALRQTEVT NSLGHLTVVK FDEAGLPLAE
IDPLDGVTTF EYDDVGRTVA VTAPGGLRTG FTYDARGNLL GVRHPDGSIV GCEYDSDDQL
LAVIDPLGHR WEHASDARGL PSSQTDPLGA VTRFEHDDRG QLVRHVNARG AVTQLRYDRY
GLPAQMIDAL THVTRFDYDA LGRLRTQVNA LGQRSRYHCD AKGRLQRITQ HDGAQLTCAY
DAEDRLVRYA DENGAITELT YSGTGLIARR VQPDGHAVRY DYDSEEQLVA VVNPRGERHE
LTRDPLGRIV EEIDYWGQCR RFHYDASGRL LRSIDPMGRT ISFHTDAMGR ITHKTWPEIS
GGAPAGAEDF RYDAAGRLVE ARNAHSHFKH RFDALGHLVE EQQGSFRIER AYDAAGNSVE
RKTSAGNRVA VRYDLLNRPA EIAINDEPPI TIERNALGQA TAEHLSEHVV RTLRYNDQGL
VAAQAVAKDG APLFDTRFDY DAAGNLTRRT DSQQGNDLYT HDPMGRILSH VDPMGRVRHY
LSDPAGDRLR TNVRIVAMAQ TASGQQQPEH WTREGEHEGW HYVFDRAGNL TSRTQTRAPN
QPALHLAWDT NQRLTQSRWE RGPHHGEVTT YGYDPLGRRV FKRNTTHTTW FFWDGDALLG
EACQENALVP KTKKSPVTSL LERRKQEDAL RQLHAKTREF VLKPGTFEPL ALIDKEMPPS
SVDTSEDTAR VLHYHNDPDG RPLRMTTRDG QIVWAVRYDV WGGIARKDCE LLAQPIRCQG
QQEDAETGLF YNRHRYFDPI IGAYVSADPI GLRGGVNPYA YGCSNPYFWI DPLGLAASCE
RHLRSIDEQL QQGRRARIDV ASKDDAIELL LAYTTGPAGR RGAFRNTTDQ PLPEGKKSES
GSDWLPGGRG AYQREGTYHW DAADPNAKAG DHALEGNHLQ IHNFDGKIIR IFFP
|
|---|
| |