| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Vapar_0244 |
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| Symbol | |
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| ID | 7971453 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Variovorax paradoxus S110 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_012791 |
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| Strand | - |
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| Start bp | 260353 |
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| End bp | 261126 |
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| Gene Length | 774 bp |
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| Protein Length | 257 aa |
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| Translation table | 11 |
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| GC content | 67% |
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| IMG OID | 644790847 |
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| Product | 4-hydroxyphenylacetate degradation bifunctional isomerase/decarboxylase,HpaG2 subunit |
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| Protein accession | YP_002942173 |
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| Protein GI | 239813263 |
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| COG category | [Q] Secondary metabolites biosynthesis, transport and catabolism |
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| COG ID | [COG0179] 2-keto-4-pentenoate hydratase/2-oxohepta-3-ene-1,7-dioic acid hydratase (catechol pathway) |
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| TIGRFAM ID | [TIGR02303] 4-hydroxyphenylacetate degradation bifunctional isomerase/decarboxylase, C-terminal subunit |
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Plasmid Coverage information |
| Num covering plasmid clones | 7 |
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| Plasmid unclonability p-value | 0.0361286 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGAAGCACG CACGCGTCAT CTTCGAAGGC CGCGAGCACA CCGGCACCGC GCACGAATTC
AACGGCCAGG CCGATGCCGC CGTGCGGCTG GACGACGGCC GCATCGTGCC GCAGGAACAG
CTCACGTGGC TGCCGCCGCT CGCGCCCACG CCGCGGCCGC GCACCATCCT CGCGCTCGGC
CTCAACTACG CCGACCACGC GAAGGAACTC GAGTTCAAGG CGCCCGAGGA ACCGCTGGTG
TTCGTCAAGG GCCAGAGCAC GCTGATCGGC CACCGCCAGC ACACGCACCG CCCGGCCGGC
GTGCAGTTCA TGCACTACGA ATGCGAGCTC GCCATCGTGG TCGGCAAGAC CGCAAAGCGC
GTAAAGCGGG CCGACGCCTA CGACTTCATC GGCGGCTACA CCGTGGCCAA CGACTACGCG
ATCCGCGACT ACCTGGAGAA CTGGTACCGC CCCAACCTGC GCGTGAAGAA CCGCGACACC
TGCACGCCGC TCGGCCCGTG GTTCGTCGAT GCGGCCGACG TGCCCGACCC CATGGCGCTC
GCATTGAAGA CCACGGTGAA CGGCACCGTC ACGCAGCAGG GCAGCACGCG CGACATGATC
TTCGACGCGC CCTTCCTCAT CGAGTATTTC AGCCGCTTCA TGACGCTCTC GCCCGGCGAC
CTGATCCTCA CGGGCACGCC CGACGGCGTG GTCGATTGCA GGCCGGGCGA CGTGGTCGTG
ACGGAGATCG AGCGCATCGG CGCGCTGGTC AACACCATCC AAGGAAAAAC ATGA
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| Protein sequence | MKHARVIFEG REHTGTAHEF NGQADAAVRL DDGRIVPQEQ LTWLPPLAPT PRPRTILALG
LNYADHAKEL EFKAPEEPLV FVKGQSTLIG HRQHTHRPAG VQFMHYECEL AIVVGKTAKR
VKRADAYDFI GGYTVANDYA IRDYLENWYR PNLRVKNRDT CTPLGPWFVD AADVPDPMAL
ALKTTVNGTV TQQGSTRDMI FDAPFLIEYF SRFMTLSPGD LILTGTPDGV VDCRPGDVVV
TEIERIGALV NTIQGKT
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