| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Vapar_0243 |
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| Symbol | |
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| ID | 7971452 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Variovorax paradoxus S110 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_012791 |
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| Strand | - |
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| Start bp | 258896 |
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| End bp | 260356 |
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| Gene Length | 1461 bp |
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| Protein Length | 486 aa |
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| Translation table | 11 |
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| GC content | 68% |
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| IMG OID | 644790846 |
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| Product | 5-carboxymethyl-2-hydroxymuconate semialdehyde dehydrogenase |
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| Protein accession | YP_002942172 |
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| Protein GI | 239813262 |
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| COG category | [C] Energy production and conversion |
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| COG ID | [COG1012] NAD-dependent aldehyde dehydrogenases |
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| TIGRFAM ID | [TIGR02299] 5-carboxymethyl-2-hydroxymuconate semialdehyde dehydrogenase |
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Plasmid Coverage information |
| Num covering plasmid clones | 9 |
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| Plasmid unclonability p-value | 0.205962 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGAGAGTCG ATCACCTGAT CGCCGGCAAG GCTGTTGCCG GCAGCGAATA CTTCGAAACC
GTCAACCCCG CCACGCAGGA GGTGCTGGCC GAAGTCGCCT CGGGCGGCGA AGCCGAAGTG
AACGCGGCCG TGGCTGCGGC GAAGGAGGCG TTCCCCAAGT GGGCCGGCCT GCCCGCGCCC
GAGCGCGCCA AGCTCGTCCG CAAGCTCGGC GACCTGATCG CGCAGCACGT GCCCGAGATC
GCGCAGACCG AGACCAACGA CTGCGGCCAG GTCATCGCGC AGACCGGCAA GCAGCTGATC
CCGCGCGCGG CCGACAACTT CTACTACTTC GCCGAGATGT GCACGCGCGT CGACGGCCAC
ACCTACCCCA CGCCCACGCA CCTGAACTAC ACGCTGTTCC ACCCGGTGGG CGTGTGCGCG
CTGATCAGCC CGTGGAACGT GCCCTTCATG ACCGCCACCT GGAAGGTCGC GCCCTGCCTG
GCCTTCGGCA ACACCGCGGT GCTGAAGATG AGCGAGCTCT CGCCGCTGAC GGCTGCGCGC
CTCGGTGAAC TCGCGCTCGA AGCGGGCATT CCGCCCGGCG TGCTGAACCT GGTGCACGGC
TACGGCAAGG AGGCCGGCGA GCCGCTGGTG GCGCACCCCG ACGTGCGCGC GATCTCGTTC
ACCGGCTCCA CCGCCACGGG CAACCGCATC GTGAAGAGCG CGGGCCTCAA GAAATTCAGC
ATGGAGCTCG GCGGCAAGAG CCCGTTCGTG ATCTTCGAGG ACGCCGACCT CGACCGCGCG
CTCGACGCGG CCGTGTTCAT GATCTTCAGC AACAACGGCG AGCGCTGCAC CGCCGGCTCG
CGCATCCTGG TGCAGCAGTC GATCTACGCC GACTTTGCCG CCAAATTCGC GGAGCGCGCC
AGGCGCATCG CGGTGGGCGA CCCGCTCGAC GAGAAGACCA TCGTGGGCCC GATGATTTCG
CAAGCGCACC TGGCCAAGGT GCGCAGCTAC ATCGAGCTGG GTCCGAAGGA AGGCGCGACG
CTCTTGTGCG GCGGCCTCGA TGCACCGGCC AACCTGCCCG AGCGCGTTCA GCGCGGCAAC
TACGTGATGC CCACCGTGTT CGCCGACGTC GACAACCGCA TGAAGATCGC GCAGGACGAG
ATCTTCGGCC CCGTCGCCTG CCTGATCCCG TTCAGGGACG AGTCGCACGC GATAGCACTC
GCCAACGACA TCCCATACGG CCTGTCGAGC TACGTCTGGA CCGAGAATAT CGGCCGCGCC
CACCGCGTGG CTGCCGCGGT GGAGGCCGGC ATGTGCTTCG TCAACAGCCA GAACGTGCGA
GACCTGCGCC AGCCCTTCGG CGGCACCAAG GCCTCGGGCA CGGGGCGCGA AGGCGGCACC
TGGAGCTACG AGGTGTTCTG CGAGCCGAAG AACGTGGCGG TGTCGATGGG CTCGCATCAC
ATTCCGCATT GGGGAGCTTG A
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| Protein sequence | MRVDHLIAGK AVAGSEYFET VNPATQEVLA EVASGGEAEV NAAVAAAKEA FPKWAGLPAP
ERAKLVRKLG DLIAQHVPEI AQTETNDCGQ VIAQTGKQLI PRAADNFYYF AEMCTRVDGH
TYPTPTHLNY TLFHPVGVCA LISPWNVPFM TATWKVAPCL AFGNTAVLKM SELSPLTAAR
LGELALEAGI PPGVLNLVHG YGKEAGEPLV AHPDVRAISF TGSTATGNRI VKSAGLKKFS
MELGGKSPFV IFEDADLDRA LDAAVFMIFS NNGERCTAGS RILVQQSIYA DFAAKFAERA
RRIAVGDPLD EKTIVGPMIS QAHLAKVRSY IELGPKEGAT LLCGGLDAPA NLPERVQRGN
YVMPTVFADV DNRMKIAQDE IFGPVACLIP FRDESHAIAL ANDIPYGLSS YVWTENIGRA
HRVAAAVEAG MCFVNSQNVR DLRQPFGGTK ASGTGREGGT WSYEVFCEPK NVAVSMGSHH
IPHWGA
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