| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Vapar_0227 |
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| Symbol | |
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| ID | 7971436 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Variovorax paradoxus S110 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_012791 |
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| Strand | - |
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| Start bp | 243655 |
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| End bp | 244545 |
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| Gene Length | 891 bp |
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| Protein Length | 296 aa |
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| Translation table | 11 |
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| GC content | 71% |
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| IMG OID | 644790830 |
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| Product | protein of unknown function DUF6 transmembrane |
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| Protein accession | YP_002942156 |
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| Protein GI | 239813246 |
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| COG category | [R] General function prediction only |
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| COG ID | [COG2962] Predicted permeases |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 11 |
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| Plasmid unclonability p-value | 0.4176 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGCCAGCTC TCGCACTGAT CTTCAACGCT TTTGTGTGGG GCGTTTCGTG GTTCCCCTTT
CGGCACATCG AAAGCCACGG GCTGCATCCC GTCTGGACCA CCTGCATCAT CTACGTGGCG
ATCTCGCTGG CGATGGGCTT CTTTCGCCGG CACGCCTGGC GCGGCTTCGC GGCGTATCCG
ATGCTGGTGC TGCTGGGCCT GGCAGCGGGC TTCACCAACC TGGGCTTCAA CTGGGCGGTG
ACGCAGGGCG ACGTGGTGCG GGTGGTGCTG CTGTTCTACC TGATGCCGCT GTGGAGCGTG
CTGCTGGGCT GGGCCGTGCT GGGCGAGCGG CCCACCGGCG GCGCGCTCGC GCGCGTGGCG
CTGGCGCTGA CCGGCGTGGC CGTGGTGCTC AAGACACCCG GCGTCGAGTG GCCGGTGCCG
TCGAGCCTGC CCGACTGGCT GGGCCTGGCG GCCGGCTTCA GCTTTGCCGT GACCAACATC
GTGCTGCGCC ACCTGCGCGA TGCGCCCGGC GAATCGCGCG CGCTGGCCAT GTTCTGCGGA
TGCGCGGCGG TGGCGGGGAT TGCCGCGGCG GCCGGCACGC TGCTCGGCGA CTTCGGCTCG
CCGCTTGCCG CGGAGCCGGG CTGGATCGGA TGGGCGGCCT TGCTGGGCAC CGGCTTCGTG
CTGGCCAACA TCTGCCTGCA GTACGGCGCG GCCCGGCTGG CGGCCAGCGC CACGGCGGTG
ATCATGCTGT CGGAGGTGCT TTTTGCCAGC GTCTCCTCCG TGGCGCTGGG TGCGGCCCAG
ATGGACCCGC GCATCCTGGC GGGCGGCGCG CTGATCGTGC TGGCGGCCGT GTGGTCGGCG
TTTGCGCGAA CGCCGGCGCA GGGCGATGAT CGGCTTTCAT CCCCCACCTG A
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| Protein sequence | MPALALIFNA FVWGVSWFPF RHIESHGLHP VWTTCIIYVA ISLAMGFFRR HAWRGFAAYP
MLVLLGLAAG FTNLGFNWAV TQGDVVRVVL LFYLMPLWSV LLGWAVLGER PTGGALARVA
LALTGVAVVL KTPGVEWPVP SSLPDWLGLA AGFSFAVTNI VLRHLRDAPG ESRALAMFCG
CAAVAGIAAA AGTLLGDFGS PLAAEPGWIG WAALLGTGFV LANICLQYGA ARLAASATAV
IMLSEVLFAS VSSVALGAAQ MDPRILAGGA LIVLAAVWSA FARTPAQGDD RLSSPT
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