| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Vapar_0213 |
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| Symbol | |
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| ID | 7971422 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Variovorax paradoxus S110 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_012791 |
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| Strand | + |
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| Start bp | 224994 |
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| End bp | 228629 |
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| Gene Length | 3636 bp |
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| Protein Length | 1211 aa |
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| Translation table | 11 |
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| GC content | 69% |
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| IMG OID | 644790816 |
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| Product | type VI secretion protein IcmF |
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| Protein accession | YP_002942142 |
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| Protein GI | 239813232 |
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| COG category | [S] Function unknown |
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| COG ID | [COG3523] Uncharacterized protein conserved in bacteria |
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| TIGRFAM ID | [TIGR03348] type VI secretion protein IcmF |
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Plasmid Coverage information |
| Num covering plasmid clones | 9 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGCTGCGCG CGATTTTCCG TTTTCTCGTG AGCCGCGACC TGTGGGTCTT TCTCGGGCTG
CTGGCCGTTG CGTTCCTGAT CTGGATCATC GGCCCCGTCA TTGCGGTGGG CCGCTACCGG
CCGTTCGAAA GCGAGTTCGT GCGCATCGTG GTGATCGCGC TGATGTTCGC GATCTGGATC
GCGCGCGTGC TCTACCGCAA GTGGCGCGAG CGGCGCCTCA ATGCGCAGCT GCTCAACCAG
CTGCGCACGC CGTCGCCCAA GGAGAAGGCC GCCAAGCCCG AGGATGCGCC CGAGATCAAG
GAGCTGCAAA GCGGCTTCAC CGACGCCACG TCCATCCTGA AGAACATGCG TTTCGGCGCC
GATGCCGGCG GCAAGCCCGC GGGGCGCTTC GCGCTGTTCG ACCGCCAGTA CCTGTACCAG
CTGCCCTGGT ACATCTTCAT CGGCGCGCCG GGCTCGGGCA AGACCACCGC GCTGGTCAAC
TCCGACCTCG ACTTCCCACT GGCCGACCAG CTCGGCAAGG CCGCGGTGCG CGGCATCGGC
GGCACGCGCA ACTGCGACTG GTGGTTCACC AACGAGGCGG TGCTGATCGA CACCGCCGGG
CGCTACACCA CGCACGAGAG CAACCGCGAG ACCGACGAGG GCGAGTGGAA GGGCTTCCTC
GACCTGCTCA AGAAGTTCAG GCCGCGCCAG CCGATCAACG GTGCCATCCT CACCATCAGC
ATTGCCGACC TGCCGCTGGC CGACGACGCG CAGCGCGCGC GCCACGCGAT GGCGCTGCGC
AAGCGGCTGC TCGAACTGCG CAACGGCCTG GGCATCAATT TTCCGGTGTA CGTGCTGGTC
ACCAAGACCG ACCTCTTGGC CGGCTTCAAC GAGTACTTCG GCGCGCTCGG CCGCGCCGAG
CGCTCGCAGG TCTGGGGCTT CACCTTCCCG ATCGATGCCA ACCCCGCAGA CCCGGCCAAG
GCCGACCTGC GCGAGCGCTT CCACCAGGAA TACAAGCTGC TGCACCAGCG CCTGGACGAG
CGCCTGCCGG AACTGCTGGC GGCCGAGCCC GACCAGCTGC GCCGCGCGCA GGCCTACCTG
CTGCCGCAGC AGTTCGCGAG CTTCGAGGAC ATCCTGGGCA CCTTCCTGGC CGACGTGTTC
AACCCCTCGA AGTTCGAAGT CGCGCCGATG CTGCGCGGCG TGTACTTCAC CAGCGGCACG
CAGGAGGGCA CGGCTTTCGA CCGCGTGATG GGCGCGATCA AGCGCTACCT GCAGGTCAAC
GCGCCGCCCG CGCCGCCGCC GGGCCCGGGC AAGAGCTACT TCCTCAAGGA GCTGCTGCAG
CAGGTGATCT TCCGCGACGC GGGCGTGGCC GGCACCAACC TGCGCTGGTA CCGGCGCAAG
CGCGCCATCG ACCTCGCGGG CTACGGCCTC ATCGGCGTGC TGCTGGTGGT GGTGCTGGGC
GCCTGCGTGA ACAGCTGGCG CAACAACCGC GACTACGTGG CCGAGGTCGA CACCAACGCC
AAGGCCTTCA ACAAGGCCGC GGCGCGCGGC GAACTGCCGA CGGTGGTCGA TTCCAACAGC
GACATCGCGA GCTCGCTGCC CGTGCTCGAC CGCCTGCGCG ACCTGCCCAA GTCGAGCCAT
TTCGACATCG GCGATCCGCC CATGGGCTAT CGCTTCGGCC TCTACCAGGG CGAGAAGCTG
CAGGCCGCGA CCGACGGCGT CTACCAGCGC GCGCTCGAAG GCGTGCTGCT GCCGCAGGCC
GCGCAGCGCG TGGAGCAGGC GCTGCGCGAG GCCTCCAAGA CCGATGCCGA ATACAGCTAC
GAGGCGCTCA AGGCCTACCT CATGCTGTAC GACGCGGAGC GCTACGACGC CGACTTTCTC
CAGGCCTGGC TGCTCACCGA CGTGGACCGC AAGATCGGCG CCGGCCTCAC GCGCGAGCAG
CGCACCAACC TCGAGTCGCA CCTGAAGGCG CTGTTCGCCG AACGCGTGGT GACCTCGCCC
TTCGCCAAGG ACGACCGGCT CGTCACCGAG ACGCGCAACC GCCTGGCCGG CGTGCCGCTG
GCGCAGCGCG CCTATGCGCG GCTGCGGCGC ATCCTGCTGC AGACCAGTCC GCCCAATGCC
TTCAGCATCG CGGAGGCGGC GGGGGCCGAG TCGGCGCTGG TGATCAAGCG CACGAGCGGC
AAGCCGCTCA CCGACGGCAT CCCGACGCTG TTCACCTACC GCGGCTACTG GGACATCTTC
GACAAGCGCA TGGCCGAGAC CACGCTTGCG CTCGAACAGG AAGACCGCTG GGTGCTGCAG
ATCCGCGCGC CCGGCATGGC CGACATCACC TCGCGCGAGC TGCTGCTGCG CGAGGTGCGC
CGGCTCTACC TCACCGACTA CATCCGCGTC TGGGACGACT ACCTGCTCGA CGTCCGGCTG
GCCGACAGCC GCTCGCTGCT GCAGAGCATC CAGATGACGC GCGTGCTCTC GACCAGCGAG
TCGCCGATGT CGCGCCTCAT CCGCGGCGCG GCGCGCGAGA CCGACCTGCT GCGCAACCAC
GACGAAGCCA CGCGCAGCCT GCTCGACCAG GCGCAGAACC GCGTGGCCAG CACGCGCGAG
CGCATCGAGC AGCTCATCGG GCAGCCCGAC GGCAGCCAGC GCCGCAACAC CGTGCCGGAC
CGCCCCGAAT CGCTGGTGGA CAACCACTTC GCGCCGCTTC GCCGCATGGT CACCGCGCCC
AAGGCCGGCG GCCAGGCGCC GATCGACGCG ACGGCCGCGC TCATCAACGA GCTCTACACC
TTCCTCACCG CCACCGACAC GGCATTGCGC AGCGGCAACA TCCCGCCATC GAGCGACGCG
GTCACCAAGG TGCAGGCCGA GGCGGGCCGC CTGCCGGTGC CGTTCCAGGG CATGCTGAAC
GACCTCTCGG CCACCGCGTC GTCCAAGGCG GCGGCGGTGA CGCGGCAGAA CATCGGGCAG
AACGCGGCCG CCACCATCGG CCAGTTCTGC AGCCAGGCCA TTGCGGGGCG CTATCCGTTC
TCGCGCGGCT CGAACCGCGA CGTGGCCGCC GGCGACTTCG CGCAGCTGTT CGCGCCGGGC
GGCATGATGG ACGACTTCTT CCAGAAGAAC CTGGCCTCGC AGGTCGACAC CTCCGTCAAC
CCCTGGGCCT TCAAGAAGGG CGTGGACGGC AGCTCGCCGG GGCGCTCGGC GTACCTCGAT
TCGTTCCAGA AGGCGCAGGC GATCCGCGAC GTGTTCTTCT CGGGCATGGC GGGCGGGCGC
ACGCCCTCGT TCACCATCGA CATCCGGCCC GAGGACATGG ACGCCGCCAT CAGCCAGTTC
ACGCTCGACA TCGACGGCCA GACGGTGCGC TATGCGCACG GACCGCAGGC GCCCAGCACC
GTCAAGTGGC CCGGCCCGCG CAACAGCAAC CAGGTGCGGC TGCAGGTGAC GACCGCCAGC
GGCACGCCGG CCGGCGGCAT CGTCACCGAA GGGCCGTGGG CGCTGCACCG GCTGTTCGAC
AAGGCCTCCA TTTCGTCGGG CAGCGCGCCC GAATCGTTCA ACGCGACCTT CGACCTGCAA
GGCAAGAAGG TGGTGCTCGC GGTGACGGCG AACAGCGTCT ACAACCCGCT GCGCCTGCAC
CAGATGAACG GCTTTTCGTG CCCCGGGAAA TCCTGA
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| Protein sequence | MLRAIFRFLV SRDLWVFLGL LAVAFLIWII GPVIAVGRYR PFESEFVRIV VIALMFAIWI
ARVLYRKWRE RRLNAQLLNQ LRTPSPKEKA AKPEDAPEIK ELQSGFTDAT SILKNMRFGA
DAGGKPAGRF ALFDRQYLYQ LPWYIFIGAP GSGKTTALVN SDLDFPLADQ LGKAAVRGIG
GTRNCDWWFT NEAVLIDTAG RYTTHESNRE TDEGEWKGFL DLLKKFRPRQ PINGAILTIS
IADLPLADDA QRARHAMALR KRLLELRNGL GINFPVYVLV TKTDLLAGFN EYFGALGRAE
RSQVWGFTFP IDANPADPAK ADLRERFHQE YKLLHQRLDE RLPELLAAEP DQLRRAQAYL
LPQQFASFED ILGTFLADVF NPSKFEVAPM LRGVYFTSGT QEGTAFDRVM GAIKRYLQVN
APPAPPPGPG KSYFLKELLQ QVIFRDAGVA GTNLRWYRRK RAIDLAGYGL IGVLLVVVLG
ACVNSWRNNR DYVAEVDTNA KAFNKAAARG ELPTVVDSNS DIASSLPVLD RLRDLPKSSH
FDIGDPPMGY RFGLYQGEKL QAATDGVYQR ALEGVLLPQA AQRVEQALRE ASKTDAEYSY
EALKAYLMLY DAERYDADFL QAWLLTDVDR KIGAGLTREQ RTNLESHLKA LFAERVVTSP
FAKDDRLVTE TRNRLAGVPL AQRAYARLRR ILLQTSPPNA FSIAEAAGAE SALVIKRTSG
KPLTDGIPTL FTYRGYWDIF DKRMAETTLA LEQEDRWVLQ IRAPGMADIT SRELLLREVR
RLYLTDYIRV WDDYLLDVRL ADSRSLLQSI QMTRVLSTSE SPMSRLIRGA ARETDLLRNH
DEATRSLLDQ AQNRVASTRE RIEQLIGQPD GSQRRNTVPD RPESLVDNHF APLRRMVTAP
KAGGQAPIDA TAALINELYT FLTATDTALR SGNIPPSSDA VTKVQAEAGR LPVPFQGMLN
DLSATASSKA AAVTRQNIGQ NAAATIGQFC SQAIAGRYPF SRGSNRDVAA GDFAQLFAPG
GMMDDFFQKN LASQVDTSVN PWAFKKGVDG SSPGRSAYLD SFQKAQAIRD VFFSGMAGGR
TPSFTIDIRP EDMDAAISQF TLDIDGQTVR YAHGPQAPST VKWPGPRNSN QVRLQVTTAS
GTPAGGIVTE GPWALHRLFD KASISSGSAP ESFNATFDLQ GKKVVLAVTA NSVYNPLRLH
QMNGFSCPGK S
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