Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Vapar_0212 |
Symbol | |
ID | 7971421 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Variovorax paradoxus S110 |
Kingdom | Bacteria |
Replicon accession | NC_012791 |
Strand | + |
Start bp | 223612 |
End bp | 224994 |
Gene Length | 1383 bp |
Protein Length | 460 aa |
Translation table | 11 |
GC content | 71% |
IMG OID | 644790815 |
Product | hypothetical protein |
Protein accession | YP_002942141 |
Protein GI | 239813231 |
COG category | [S] Function unknown |
COG ID | [COG3455] Uncharacterized protein conserved in bacteria |
TIGRFAM ID | [TIGR03349] type IV / VI secretion system protein, DotU family [TIGR03350] type VI secretion system OmpA/MotB family protein |
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Plasmid Coverage information |
Num covering plasmid clones | 10 |
Plasmid unclonability p-value | 0.468684 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGAACGGTG TCAACGACAT GGCCGTCGGT CCGGGAGGCT TCGTGCCGCC CAACCCGGGC GGCGGCGCCA ACAACAACGG CGGCAACGGC GATGCGGCGG GCATGCCGCC GGCATCGCGC GGCGCGGGGC AGCAGCAACC GCAGTCATTC ACCGCCTGGC ATGACGCACG CCGTCCGCAT GCGGGCGACA CGGCGCTGGC CGGCAACAAC CCGCTCGTCG CGGCGGCCAA CCCGCTGCTC GACCTGATCC CGCAGATCCG CGCCACCGGC CACCACGATG CGCCCGCGCA ATTGCGCGAG CACCTGGTCG ACGAGGTCCG GCGCTTCGAG ACGCGCGCGC AGCAAAGCGG CATTGCGCCC GAAGTGATCA TCGGCGCGCG CTACTGCCTG TGCACCGCGG TCGACGAAGC GGCCGCGCTC ACGCCCTGGG GCGGCAGCAT CTGGTCGTCG CAGAGCCTGC TCGTGATGTT CCACAACGAG ACCTGGGGCG GCGAGAAATT CTTCCAGCTG CTGTCGCGGC TGGTGCAGAA CCCGCAGCAG CACCTGCAGC TGATCGAGCT CATCTACTTC TGCCTGGCGA TGGGCTTCGA AGGGCGCTTC CGCGTCATCG ACAACGGCCG CACGCAGCTC GAAACGCTCA AGCAGCGGCT GCTGCAGATC ATTCGCCAGA CGCGCGGCGA AATTGCCGTG CCGCTGTCGC CGCACTGGCA GGATGCGAGC GCGCCGGTGC GCCGCACGCG CAACTGGGTG CCGCTGTGGG CCGTGGGCGC GGTGGCGGCG GTGCTGCTGG TGCTGGTGTT CGGCGTGCTC ACCTTCAGCC TGGCGGGCCG TTCCGACGGC GCATTCGCCG CGGTCAATGC GGTGCGCCTG CCGCAGACGC AGCGTGCCGT GGCCGTTGCG CCGGCACCGC AGCCGCGGCT GCAGCGCTTT CTCGAACCCG AGATCCGCGA CGGCCTGCTG ACGGTGCGCG ACGAGGCCGA CCGCAGCGTG GTGGTGCTGC GCGGCGACGG CCTGTTCGCA TCGGGCTCCG ACCGCGTGCT CGACCGCTAT GCGCCCGTGC TCGCGCGCGT GGCCGATGCG CTCAACTCGG TGGAGGGCAA CGTGCTCGTC AGCGGCTTCA GCGACGACCA GCCGATCCGC AGCGTGCGCT TTCCGTCCAA CTGGCAGCTC TCGCAGGCGC GTGCCGATGC GGTCAAGAAG ATGATCGCCA CGCGCGTCAC GCGGCCCGAG CGCCTGCGCG CCGAAGGCCG CGGCGATGCC GATCCGCTGG TGCCTAATGA TTCGCCGGCC AACCGTGCGC GCAACCGGCG GGTCGAAGTG ACGCTGCTGG TGGCACCCGT GGCCGCAGGC GCCGCTCCTG CACCGCAGGG AGGAACCCGC TGA
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Protein sequence | MNGVNDMAVG PGGFVPPNPG GGANNNGGNG DAAGMPPASR GAGQQQPQSF TAWHDARRPH AGDTALAGNN PLVAAANPLL DLIPQIRATG HHDAPAQLRE HLVDEVRRFE TRAQQSGIAP EVIIGARYCL CTAVDEAAAL TPWGGSIWSS QSLLVMFHNE TWGGEKFFQL LSRLVQNPQQ HLQLIELIYF CLAMGFEGRF RVIDNGRTQL ETLKQRLLQI IRQTRGEIAV PLSPHWQDAS APVRRTRNWV PLWAVGAVAA VLLVLVFGVL TFSLAGRSDG AFAAVNAVRL PQTQRAVAVA PAPQPRLQRF LEPEIRDGLL TVRDEADRSV VVLRGDGLFA SGSDRVLDRY APVLARVADA LNSVEGNVLV SGFSDDQPIR SVRFPSNWQL SQARADAVKK MIATRVTRPE RLRAEGRGDA DPLVPNDSPA NRARNRRVEV TLLVAPVAAG AAPAPQGGTR
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