Gene Vapar_0208 details

Gene Information

• Locus tag: Vapar_0208
• ID: 7971417
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Variovorax paradoxus S110
• Kingdom: Bacteria
• Replicon accession: NC_012791
• Strand: -
• Start bp: 219032
• End bp: 220969
• Gene Length: 1938 bp
• Protein Length: 645 aa
• Translation table: 11
• GC content: 72%
• IMG OID: 644790811
• Product: FHA domain containing protein
• Protein accession: YP_002942137
• Protein GI: 239813227
• COG category: [T] Signal transduction mechanisms
• COG ID: [COG3456] Uncharacterized conserved protein, contains FHA domain
• TIGRFAM ID: [TIGR03354] type VI secretion system FHA domain protein

Plasmid Coverage information

• Num covering plasmid clones: 11
• Plasmid unclonability p-value: 1
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGCGTTGGA CGGTGATCGA ACATGCCGGC AAGCCGGTGG CTGCAGGCCC TTCGGCCTTG 
CTCGCGGCGC CCGGCGGAAC CATCGGGCGC AGCCCCGACA ACCACCTGGT GCTGCCCGAC 
GAGCAGCGCC AGATCTCGCG CCTGCAGGCC ACGGTGCGTT TCGACGACAG CGGCGCGGCG 
GTGCTGCGCA ACATGAGCGC GGTGCTGCCC ATCGGCGTCA ACGAGCGCAC GCTGCAGCAC 
GAGCAGGAGG CGCCGATCGC CGAGGGCGAC CGCGTGACCA TCGGAAGCTA TGTGCTGGTG 
GCGGGGAGCG GGCAACGCAC CGCGCCCGTC GAGCCCGCCG CGCCGCTGAT GGCGGCTGCA 
CCGCCGCCGG CCGCGCCTGT GCACAGCGCA TTGCCCGCCA GCACCATGGC GCCCGCGCCG 
ATGGACTCGC TGCTGCCGGC CGCCCCCGTC TCCGATGTGT TCTCGGACCT CTTCGGCGCC 
GGCGCGCTGC CGATCGGCGA GACGCAGCCC GTGACCGTGG CGATGCCGCC GCCGACCGTG 
CCGGCGCCAC CGCCTGCACA GGTACTGGCC GCTGCGCCGG TGCCTGCAGC ATCGCCATCG 
CCAGCCCCCT CGCCGGCAAG CGCGCAGGCA AGCACGCAGG CGAGCGCCTC GCAGATTCCC 
TCCGCCGCCG ATTGGGATGC CATCCTCGCG AATGCGCCGC GCCGCGAGGC GAGCGCCTCC 
GAGCCCATGC CCGACCCGAT GGCGCACGAG CCCTTCGAGC TGCCCTCGCA GGCACGCAGG 
AACCCGGTCG ATCCGCTGGC CGAGCTGAAT CCGCGTGCGG AAGACAGCAT GTCCGACGTG 
GCGCTCAAGC GCGGCATGGA CCCGCTGTCC TTCTTTGCCG CCGACAACGA CGCACCCTCG 
CCGCTCTCCG ATCCGCGCCC CACCGCGCTG ACCCACGAAG ATCCGCTCAG CGATGTGCAT 
CCGGCCATCG ATCTGCTGGC CAGGCCGGCG GCGGCCCCAC AGGGCTACAG CCATTCGAAC 
CATGCGCGGG AACTGGCGGC GCAGTTCAGG CCGCCGAACC CGGTGCCCTT CGATCCGCCG 
GCTGCGAAGC CGGCCGAGCC GCGGGTGTCT GCGCAGGTTG AGCCGCCACC TTCGGCGCCA 
CCACCACCAC CACCACCACC GCCACCGCCA CCGCCACCAC CCCCGCCGCC ACCGCCGGCA 
CCGGTGCCCG TCGCGGCCCC GCGCGTGGAG AATGTTGCGC CGCCCGCACC GCAGCAACCG 
AAGCCTGTTG CCGCGCCCTC GCCCGTGGCC GCGACGCCAG TTCCTGTCGC GGCGCCGCCA 
TCGGCCCCCG CCTCTTCAGA CGAACTCTTC AGGGCCTTCC TCGAAGGCGC CGGCGTGCCC 
GACGTGGCCG GCCAGCAGCC GCTGGATGCC GAAGCCATGC GGCGCCTCGG CCGGCTCATG 
CGCGCGTTCA CCGACGGCAC CATCGAGCTG CTCTCGTCGC GCGCCATGCT CAAGCGCGAA 
GTGCGTGCCG AGATCACGAT GATCGTCGAC GAGGAGAACA ACCCCTTCAA GATCCTTCCC 
AACGGCCGCG CCGTGCTGAT GCAGATGTTC GGCGCGCGCA TGCCCGGCTT CCTGTCGCCC 
GAGGCCGCCG TGCACGACGC GCTCGGCGAC CTGCAGTCGC ATCAGCTCGG CATGGTGGCC 
GGCATGCGCG CCGCGCTGCT CACGGTGCTC AAGCGCTTCG ATCCCGCGGC GCTCAACACC 
GCCACGCCGC ACGACGGCGG GCTGGGCGAA AAACTGCTGC CCGGCGGCCG CGAGGCGCGC 
CTGTGGCGCC AGCTGCAGAA GCTGCATGCA GAAACCACCG CGGCCGTCGA GGACGACTTC 
CAGGCCGTCT TCGGCCGGGC CTTCCAGCAG GCCTACGACA AGGAGATGGA ACGCTTGAAG 
GAGGCGCGCC GTGCTTGA 

 

Protein sequence

MRWTVIEHAG KPVAAGPSAL LAAPGGTIGR SPDNHLVLPD EQRQISRLQA TVRFDDSGAA 
VLRNMSAVLP IGVNERTLQH EQEAPIAEGD RVTIGSYVLV AGSGQRTAPV EPAAPLMAAA 
PPPAAPVHSA LPASTMAPAP MDSLLPAAPV SDVFSDLFGA GALPIGETQP VTVAMPPPTV 
PAPPPAQVLA AAPVPAASPS PAPSPASAQA STQASASQIP SAADWDAILA NAPRREASAS 
EPMPDPMAHE PFELPSQARR NPVDPLAELN PRAEDSMSDV ALKRGMDPLS FFAADNDAPS 
PLSDPRPTAL THEDPLSDVH PAIDLLARPA AAPQGYSHSN HARELAAQFR PPNPVPFDPP 
AAKPAEPRVS AQVEPPPSAP PPPPPPPPPP PPPPPPPPPA PVPVAAPRVE NVAPPAPQQP 
KPVAAPSPVA ATPVPVAAPP SAPASSDELF RAFLEGAGVP DVAGQQPLDA EAMRRLGRLM 
RAFTDGTIEL LSSRAMLKRE VRAEITMIVD EENNPFKILP NGRAVLMQMF GARMPGFLSP 
EAAVHDALGD LQSHQLGMVA GMRAALLTVL KRFDPAALNT ATPHDGGLGE KLLPGGREAR 
LWRQLQKLHA ETTAAVEDDF QAVFGRAFQQ AYDKEMERLK EARRA