| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Vapar_0204 |
|---|
| Symbol | |
|---|
| ID | 7971413 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Variovorax paradoxus S110 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_012791 |
|---|
| Strand | + |
|---|
| Start bp | 216004 |
|---|
| End bp | 217080 |
|---|
| Gene Length | 1077 bp |
|---|
| Protein Length | 358 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 61% |
|---|
| IMG OID | 644790807 |
|---|
| Product | pentapeptide repeat protein |
|---|
| Protein accession | YP_002942133 |
|---|
| Protein GI | 239813223 |
|---|
| COG category | [S] Function unknown |
|---|
| COG ID | [COG1357] Uncharacterized low-complexity proteins |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 11 |
|---|
| Plasmid unclonability p-value | 0.550889 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGACCCCGG CCAGTGTGCA GGCGATGATC CATGGCGGAG AAACGATCGC TCGGAAGCAA
CTTCAAGCGC TCGACTTTCG GGGCATGGAC CTCACGGGTG CCATTTTCCT GGAGACCGAT
CTGAGTGATG CCGATCTGTC CGGTGCCAAG CTCGATGCGA GCATCTTCAA GCAGTGCAAG
CTTGCCGGGG CCCGGCTTGA TGCCGCGCAT GTGGACCGTT GTGCATTCGA GCATTGCGAT
GCAACCGGGA TCCGGATGGT CGGCGCCACG CTCGACGGTG CCGCCTTCTA CCAATGTGGA
CTGGCCGGCG CAAAGCTCGA TGACGCAAAT GCCGGCGTTG CCTCTTTCGC CAACTGCACG
CTCGACCGCG CCTCGTTCGT CAATGTGCTG TCGGAAGCCC TGGTGTTCTC CGAGACCTCG
CTCGATGCCA CCGACTTTTC CACGACGCTC CTGCACAAGA CAGTGTTCTA CCGGGCAGAT
CTTCGATCGG CAATCTTCCG TGGCAGCCGG TTCGACAAGG CTGTCTTCTC CGAGGCCAAG
CTCTCGGGAC AGAGATTCAA TGCGCAGAAG TTCCTGCTTT GCCAGTTCAT CGACGCAGAA
CTCGACGGAT GCGATTTTGA CGAGTCCATG CTTGTGCAAT GCAACTTCAA GGGCGCCAAG
CTCGAAGGTG CGAGCCTGAA CCGGGTCCAT GCGCCCCAAT GCCTCTTTCC GTCGGCCAAG
CTCGATGGCG TCGGTTGCCG CGGCGCCCAT TTCAATCAAA GCATCTGGGT CGAGGTGCAG
GCGCGCGGAG CCGATTTCTC CGACGCGAAA CTGGAGCAGT GCATCTTCCA GCGTGCCAGC
TGCAGCCATG CCGTCTTCGC AAGGGCGGAC CTTACATACG CCGATTTTTC TCACGCCGAT
CTGCGTGGTG CCGATCTGCG GGGCGCTCGC TTCCTGCGCA CCAAGGTTCA CCGCGCGCAA
CAGGGGGGAA CGAGATATGG CGACCGTGGT GGCTTGCTGT TGAACGACCC CGACCTGTTT
GCCGCCGAGG AGTTCTCGGC ACGCCGCCTC GCGCGTCCGG GCGCATATCC CTCTTGA
|
|---|
| Protein sequence | MTPASVQAMI HGGETIARKQ LQALDFRGMD LTGAIFLETD LSDADLSGAK LDASIFKQCK
LAGARLDAAH VDRCAFEHCD ATGIRMVGAT LDGAAFYQCG LAGAKLDDAN AGVASFANCT
LDRASFVNVL SEALVFSETS LDATDFSTTL LHKTVFYRAD LRSAIFRGSR FDKAVFSEAK
LSGQRFNAQK FLLCQFIDAE LDGCDFDESM LVQCNFKGAK LEGASLNRVH APQCLFPSAK
LDGVGCRGAH FNQSIWVEVQ ARGADFSDAK LEQCIFQRAS CSHAVFARAD LTYADFSHAD
LRGADLRGAR FLRTKVHRAQ QGGTRYGDRG GLLLNDPDLF AAEEFSARRL ARPGAYPS
|
|---|
| |